Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03864 ATGGTATCCAAAAACCCGAACCCGCCCGAAGGGTTTTGCTTGGATCCGAGTGGCATGGCTCTACCTGGACTCGACCCCTTCGCCTCCGTCTCCGCCGCCACGGCCACGGCGGTTTCCGCCTCTAACTCGTTAGAGGACGCCGCCAAGAAGATCCGCAAGCCCTACACTATTACTAAGTCCAGGGAGAACTGGACTGAACCCGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTCGGATCAAAAACTGTTATACAGATACGTAGCCATGCGCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGGACAAACGAACATCTTCCTCCACCCAGGCCTAAAAGGAAAGCTGCGCATCCATATCCTCAAAAAGCTTCCAAAAATGGTCCTCCTTTACTCTCACAAGTATCAGGATCTTTTCAATCTTCATCGGCTTTGCTTGAACCTGGACATATCCTGAAGCATAATTCCTCACCAATGCTTAAAACTCCTATTATGAATGCTGTGGTGTCTTCCCGGTCAAACAACACCTTGCAAACAACCAATATATTGCATGTTCCAAAATTGAATAATTCTTGCAGTAGCAGTGAAAGCACTCCTAAAGTGAGGCTGGTTAGTGAATCTAATGGTCAAGGGAATAATAATCATCCATTGAGAGGCAAGGCTTTACTAATTTTCCTTTATAATTTCATGTTGATTTTCTTTTATAGTTACATGTATGCACAGCAAGTTCTTCCGGATTTTTCTCAGGTATACGGCTTCATTGGCAGTGTATTTGACCCAGATGCAACTGAGCATCTGCAGAGACTAAAACAGATGGACCGAATAGATGTTGAGACGGTGCTGCTGTTGATGAGAAACCTGTCTATCAATTTAACTAGCCCAGATTTCGAGGATCATAGAAAGCTGCTATCATCATCATATGAGATTGAACTGGAGACAAACAACTATTTCATTGCAGATAGACCCATGCACGATGAGCAATTGAAGAGTGCTACTTAG 1032 0.4409 MVSKNPNPPEGFCLDPSGMALPGLDPFASVSAATATAVSASNSLEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTNEHLPPPRPKRKAAHPYPQKASKNGPPLLSQVSGSFQSSSALLEPGHILKHNSSPMLKTPIMNAVVSSRSNNTLQTTNILHVPKLNNSCSSSESTPKVRLVSESNGQGNNNHPLRGKALLIFLYNFMLIFFYSYMYAQQVLPDFSQVYGFIGSVFDPDATEHLQRLKQMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSSYEIELETNNYFIADRPMHDEQLKSAT. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03864 343 SMART sant 60 108 IPR001005 -
Seca10g03864 343 CDD SANT 63 106 IPR001005 -
Seca10g03864 343 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Seca10g03864 343 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Seca10g03864 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Seca10g03864 343 PANTHER SWI/SNF COMPLEX-RELATED 35 305 - -
Seca10g03864 343 MobiDBLite consensus disorder prediction 110 147 - -
Seca10g03864 343 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Seca10g03864 343 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Seca10g03864 343 Gene3D - 63 111 - -
Seca10g03864 343 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Seca10g03864 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03864 Seca-Chr10 80928411 80943005 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca10g03864 Myb_DNA-binding 4.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03864 - - gmx:778054 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03864 10 80928411 80943005 Seca10g03864 10 80928411 80943005 ECH