Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03844 ATGGGTTTCTCCCAAGGAACTTGCACTGATTCCAGGGACCTTTCCAATGCCCAAAGTGCTCTTCCTACATATGCGTGTGACTACAACAAGCTCAAATTTCGAACCTTTTTGAGAAAAATGATCTGGGAATTTGGTTTTGCGTGTGTTGGCAACTCTTCCTGTAACCGTGGGAACTCCGAGAGAAACCTGGGTCATAACGGCAAAAAGATGAGTTTAGAGCACAACAAGGCTTGGTTGCTTGCGGAGTCTGGTGGAGCAGAATTGACCAATGCTGACCCTCAATCGGTTCACTCTTCTTTTAGATTTAGCTTCTGTTCTCAGGTGGAGTTGGAGTCCTTGAACATGAGTTCTTCCTCTGCTGCTACCGTTTTGATGGTGAATTTGGACAATGGGGTGAGTGAATCTCGTGCTAAGGAACTCAAATGGAGGAGAATGGAGTCATTGGAGAAGAGCATTTCCCCTGTTGCTCACTCTTTGATCAGGTTCAGCTATGGTGAAATTCTATCTGCTACTCGGAATTTCTCCAAAGGTAGGGTGTTGGGAAGAGGGGCATTGAGCTGTGTTTTTAGGGGAAGAGTAGGGCTTTTTAGAAATGCTGTAGCAATTAAACAGTTGGACAAGGAAGACAAGGAGTCTGCCAAGGCCTTTTGTAGAGAATTGATGATTGCTAGCTCTCTTCATAGCCCAAATGTTGTTCCCCTTGTGGGTTTTTGTATTGACCCGGAGGAGGGTTTGTTTTTGGTCTACAAGTATGTCTCAGGGGGCAGCTTGGAGCGCCACTTGCATGGTACACATTTATGGAGGAAGAAGGGTGGTTCACCACTTCCATGGTCAGTGAGGTACAAAGTTGCAGTTGGGATTGCTGAAGCTGTGGCTTATCTGCATAATGGAACTGAAAGATGTGTTGTTCATAGAGACATTAAGCCCTCAAACATTCTGCTTTCTTCTAAGAAGACTCCCAAGCTATGTGATTTCGGATTAGCTACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGATATTTGGCTCCTGAATATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTTGGAGTGGTTCTATTGGAACTCATTACTGACCGGAAGCCAATTGAAGCGAGAAGGTTTCCCGGAGAGGAGAACTTGGTCTTGTGGGCTAAACCTTTTCTACAGAAGGGGAAAGGAGCCATAGAAGAGTTGCTTGATCCTCAACTGAAGTGCAATTTGAAATTCTCAAATCAAATGGGTAGAATGATTGAAGCTGCAGCTGCCTGTGTCACAAATGAAGAATCTAGGAGACCTGGAATACATGAGATTATTGCAATACTGAAAGGTGAAGAAGAACCTATTTTCTCTAAAAGAAAGAAGTCCAGTTTTCTTGGGAATGGCTGTGTGATTGATTGTTATTCTCAATTACAACAAACAAATAATGAGATGAAAAGTCACTTGGCTTTGGCAATGCTAGGAGTTTCAGAGTTTGAGGATGATGATTATCTCTATGATCGTTAA 1545 0.4304 MGFSQGTCTDSRDLSNAQSALPTYACDYNKLKFRTFLRKMIWEFGFACVGNSSCNRGNSERNLGHNGKKMSLEHNKAWLLAESGGAELTNADPQSVHSSFRFSFCSQVELESLNMSSSSAATVLMVNLDNGVSESRAKELKWRRMESLEKSISPVAHSLIRFSYGEILSATRNFSKGRVLGRGALSCVFRGRVGLFRNAVAIKQLDKEDKESAKAFCRELMIASSLHSPNVVPLVGFCIDPEEGLFLVYKYVSGGSLERHLHGTHLWRKKGGSPLPWSVRYKVAVGIAEAVAYLHNGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITDRKPIEARRFPGEENLVLWAKPFLQKGKGAIEELLDPQLKCNLKFSNQMGRMIEAAAACVTNEESRRPGIHEIIAILKGEEEPIFSKRKKSSFLGNGCVIDCYSQLQQTNNEMKSHLALAMLGVSEFEDDDYLYDR. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03844 514 SMART serkin_6 174 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03844 514 PANTHER OS08G0249100 PROTEIN 116 470 IPR046958 -
Seca10g03844 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Seca10g03844 514 ProSiteProfiles Protein kinase domain profile. 174 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03844 514 FunFam Putative receptor-like serine/threonine-protein kinase 252 471 - -
Seca10g03844 514 FunFam probable serine/threonine-protein kinase PBL7 135 251 - -
Seca10g03844 514 Pfam Protein kinase domain 175 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03844 514 SUPERFAMILY Protein kinase-like (PK-like) 161 460 IPR011009 -
Seca10g03844 514 Gene3D Phosphorylase Kinase; domain 1 158 251 - -
Seca10g03844 514 Gene3D Transferase(Phosphotransferase) domain 1 252 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03844 Seca-Chr10 80182470 80185567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03844 162 458 Trihelix Transcription Factor Family AT1G70460 42.140 1.05e-66 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca10g03844 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03844 - - gmx:100786826 905.975