Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03807 ATGGCTCATGAAGATTGGGATCTCTTTGCCATAGTGAGAAGCTGCAAAGCTGCTACCTTTACAGCTTCTACCACCACTATAGAGTCTCCACCTCCAACAACCAATACTACATCCCCTCAAGACACTACAACCTCTTGTTTGGCCCCTTCTACTATTAGCCAAGAAGAAGACCCATTCTCTTTTCCCAATTATATTGTGCAACCTAGAACCAATGGGTTCCTAGAGCTACACCAATTGCTAAAGAATTTCAACCCCACCACCACTGCAACCACTAGCACTACTAGTGGCCATGGCATCAATCCCAACTCCACTTTTTCTGAAGGGTTCATTGGACAACAGCAGATGCAGCAAAACCTCCACCATCCTATGCCTGCTCCCACAACTTACACCTCCACTACTGATTTTAACAGATTCCATCACCACCACCAACAACAACAACCCCAACCCCCAGAACAACAACAACTACCCATTCAAGTACCCCAAAACAATTCTATGGTGTTACCAAACACACAACCACAAACACCCAGATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTGTGCCATGTGACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGAGAAAATATGGACAAAAACCCATCAAGGGTTCTCCATATCCAAGAAACTATTATAGATGCAGCAGTTGCAAAGGATGTGCAGCGAGGAAGCAAGTAGAGCGAAGCACAACAGAACCCAACATGTTTATTGTAACATACACCGGAGATCACAAGCACGCCAAACCCGTTCACCGGAATTCCCTCGCCGGAAGCACCCGGAACAAGCCATCCACGACCCGGTTATCAACCGGGTCACCCTCCAATGCTGTCTCAAGCTCCGCGCTTTCTCCCATCCCGTCGAAGTCAGATCCGCCGGAGAACGAAGAAGCACATGCTGCCGCCGGTGAACCCGAATGCCCTGTCCCGGAAACGGAGCCCGAACCCATTTCCGATGACGACGATGTTTTGATACCCAACAACATGGCTGTTTTTTCAGATGTCTTCGAATTGGGTCTGCAAAATTTTGACAGCGGGTTCAAGCAATCGGGTGGGTTGGATCCAAAAACCGTAACCGATTTGACCCGTTCCAGCTCTGAACCTCTTCTCCAATGA 1140 0.4798 MAHEDWDLFAIVRSCKAATFTASTTTIESPPPTTNTTSPQDTTTSCLAPSTISQEEDPFSFPNYIVQPRTNGFLELHQLLKNFNPTTTATTSTTSGHGINPNSTFSEGFIGQQQMQQNLHHPMPAPTTYTSTTDFNRFHHHHQQQQPQPPEQQQLPIQVPQNNSMVLPNTQPQTPRSRKRKSQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSTTEPNMFIVTYTGDHKHAKPVHRNSLAGSTRNKPSTTRLSTGSPSNAVSSSALSPIPSKSDPPENEEAHAAAGEPECPVPETEPEPISDDDDVLIPNNMAVFSDVFELGLQNFDSGFKQSGGLDPKTVTDLTRSSSEPLLQ. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03807 379 ProSiteProfiles WRKY domain profile. 192 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca10g03807 379 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca10g03807 379 MobiDBLite consensus disorder prediction 363 379 - -
Seca10g03807 379 MobiDBLite consensus disorder prediction 163 188 - -
Seca10g03807 379 MobiDBLite consensus disorder prediction 351 379 - -
Seca10g03807 379 MobiDBLite consensus disorder prediction 23 47 - -
Seca10g03807 379 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 323 IPR044810 GO:0003700
Seca10g03807 379 Gene3D WRKY domain 180 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca10g03807 379 MobiDBLite consensus disorder prediction 263 296 - -
Seca10g03807 379 FunFam WRKY transcription factor 22 180 251 - -
Seca10g03807 379 MobiDBLite consensus disorder prediction 163 177 - -
Seca10g03807 379 MobiDBLite consensus disorder prediction 252 333 - -
Seca10g03807 379 SUPERFAMILY WRKY DNA-binding domain 192 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca10g03807 379 SMART WRKY_cls 197 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03807 Seca-Chr10 78716422 78718038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03807 75 365 WRKY Transcription Factor Family AT4G01250 37.755 1.04e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca10g03807 WRKY 2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03807 - - aprc:113866622 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03807 10 78716422 78718038 Seca10g03807 10 78716422 78718038 ECH
Seca2g00919 2 14175900 14177600 Seca10g03807 10 78716422 78718038 ECH
Seca4g11361 4 252330347 252332158 Seca10g03807 10 78716422 78718038 ECH
Seca4g08708 4 207391858 207397887 Seca10g03807 10 78716422 78718038 ECH
Seca10g03807 10 78716422 78718038 Seca10g03807 10 78716422 78718038 PCT