Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03806 ATGGATTTTGTTGATGCCAATGGACAACATCTTGTCAATGAATCTGGTAATAAGGATTCATATGTAGGTGATTCAGATACTAATAACGGTGAAGAACCTTACATTGGGATGGAATTGGAGTCACGGGAAAATGCTCTTTTGTTCTACACCCGTTATGCTAAATATGTTGGATTTGGTGTATCAACGAAAACTAGTCGGCGTTCAAAAATTTCTAGACAGTTTATTGATGTGATATTTGCTTGCACAAGACATGGGAGAAAAAGAGAATCCACTGCACTTAATCCATGTCCTTGTATCAAGGTGGAATGTGGGGCTAGCCTGCGTATTAAAAGAAATAGTGATGGAAAATGGCTTGTTCACAGTTTCATCAAAGATCATAATCATGAACTTTTTCCAGCACATGCTCACTATTTTCCTTGCCATAGAGGTATCAATCAAGCTCAAATGCAATGCATTGAAACTTTGCAACATGTTGGGGTTAGAACAAGCAAAATTTATGCTGCAATGGCCAAACAACATGGAGGATATGAAAACATCGGGTGTTTGGAGAAAGATATTAGAAATCATTTGGATAAAGGTCGTCGTTTGGATTTAGAGTCCGGAGATGCAAATGCAATGTTGGAGTGCTTTATGCTTATGCAAGAAGAAAATCCAAGATTTTTTTATGCAATTGATTTAGATGATGAAGATCGTGTGAAAAAAATATTTTGGGTGGATGCAAAAGGTAGAGATGACTATGAAGAGTTTGGAAATGTAATTTCATTTGATACAACATACATCACAAATAAGTATAAAATGCCATTTGCTCCATTCATCGGGGTGAATAATCACTTTCAGTCAAGATTACTTGGTTGTGCATTACTTGCAGATGAGACTTCAAAAACTTTCACATGGTTGATGAAAACATGGCTTAGAGCTATGGGTGGCAAACCTCCAAATGCAATAATTACAGATCAAGACAGAGCAATGAAATCAGCTATTAAAGAGGTATTTCCAAGTGCTCAACATCGTTTTTGTCTTTGGCATATACTGAGAAAGGTACCCGAGAAGCTTAGTCATGTATTAACAAAACATGAAGATTTCATGACATTTCTTAACTCATGCATTTACAAGTCTTGGTCAAAGAAGCAATTTGAAGATAAATGGGAAGAAATGGTCGAAAAATTTGAACTATTGGAGGATGAATGGACTCGATCTTTATTTGAAGAACGGGAGAATTGGGTTCCTGTTTACATGAAGGATACATTTTTTGGTGGTATGTCAACAACTCAAAGATCAGAGAGCATCAACTCATTTTTTGACAAATATGTAAGTAAAAAAACTTCGTTAAAGGAATTTGTTGAAAAATATAAAGTTGCTTTACAAGATAGAGAAGAGGCAGAAATGCAAGCTGATTTTAATACATGGCACAAGCAACCTGTTCTTAAGACTCCATCACCTTTTGAGAAGCAAATGTCGATGATTTATACACATGAAGTCTTCAAGAAGTTCCAAGTTGAGATTTTAGGATTATCTGGATGTCATTTTATGAAAAAGAATGAAAATAGTCAGATTACCACCTTTAAAATCCTAGACTTTCAGAAAGATGAAGAGTTTGTTGTAGAGTGGGATGCATTAAAAGCATAA 1626 0.3542 MDFVDANGQHLVNESGNKDSYVGDSDTNNGEEPYIGMELESRENALLFYTRYAKYVGFGVSTKTSRRSKISRQFIDVIFACTRHGRKRESTALNPCPCIKVECGASLRIKRNSDGKWLVHSFIKDHNHELFPAHAHYFPCHRGINQAQMQCIETLQHVGVRTSKIYAAMAKQHGGYENIGCLEKDIRNHLDKGRRLDLESGDANAMLECFMLMQEENPRFFYAIDLDDEDRVKKIFWVDAKGRDDYEEFGNVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLADETSKTFTWLMKTWLRAMGGKPPNAIITDQDRAMKSAIKEVFPSAQHRFCLWHILRKVPEKLSHVLTKHEDFMTFLNSCIYKSWSKKQFEDKWEEMVEKFELLEDEWTRSLFEERENWVPVYMKDTFFGGMSTTQRSESINSFFDKYVSKKTSLKEFVEKYKVALQDREEAEMQADFNTWHKQPVLKTPSPFEKQMSMIYTHEVFKKFQVEILGLSGCHFMKKNENSQITTFKILDFQKDEEFVVEWDALKA. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03806 541 Coils Coil 443 463 - -
Seca10g03806 541 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 21 520 IPR031052 GO:0006355
Seca10g03806 541 Pfam FAR1 DNA-binding domain 48 132 IPR004330 -
Seca10g03806 541 Coils Coil 375 395 - -
Seca10g03806 541 Pfam MULE transposase domain 252 345 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03806 Seca-Chr10 78708825 78710504 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g03806 MULE 1.4e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03806 - - tpra:123886760 892.108