Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03800 ATGGCTTCCGATCTCGAAGCGAAAGCCAAAGAGGCCTTCGTTGAAGACCACTTTGAACTTGCGGTGGACCTCCTTACTCAGGCCATTGATCTTGACCCCAACAAACCCGAACTCTATGCTGACCGTGCCCAAGCTAACATCAAACTGGCCAACTTCCCTGAGGCGGTTGCTGATGCGAACAAAGCAATAGAGTTGAATCCTTCTCTAGCAAAGGCATATTTACGCAAAGGTACTGCATGCATGAAGCTCGAAGAATATCAGACTGCTAAGACTGCTCTGGAGACGGGTGCCTCCTTGTCTGCAGACAAATCAAGATTTGCTAACTTGATCAAAGAATGTGATGAACTCATTGCAGCAGAATCTTATACCATGCCTATACAGGAAAAGGCTACAGCGCAGGAGGATGTATCTCCAAAAGATGTTCAGCCAGAGAAAGATCTTCCAGAGCAGCCTAAAGTGGCAGTAGCTAAACCTAAATATAGGTTAGTACAACTTTCTGATTGTTTATTTCCTTTGCTAGCATTATTATTATGCAGGCATGAATTCTACCAGAAACCAGATGAGGTGGTGGTAACAATATTTGCAAAGGGCATATCAAAGGAAAAGCTTACTGTTGACTTTGGTGAACAAATACTAAGTGTTAGGATAAATGTTCCTGGAGAAGATGCATATGTTTTTCAACCTCGTCTATTTGGAAAGATCATTCCTTCCCGATGCCGGTATGATGTTTTGTCTACCAAAATTGAAATTCGTCTTGTGAAAGCTGAATCTATTCACTGGACATCACTAGAATTTACCAGAGAAATTACAGTTGCACAGAGGGCTAATGTTTCTTCAGTTACTGGAACTCCAAAACCTACTTACCCATCCTCAAAACCAACAAGAGTAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAGGAGGAGAAAGAAGAAAAACTTGATGGTGATGCAGCATTGAACAAATTTTTCCGGGAAATATATCAAGATGCTGATGAGGATACAAGAAGAGCAATGAAGAAGTCATTTGTGGAGTCTAATGGAACAGTACTATCGACAAACTGGAAAGAAGTGGGATCAAAGAAGGTAGAGGGAAGTCCTCCTGATGGCATGGAATTGAAGAAATGGGAATATTAA 1137 0.4151 MASDLEAKAKEAFVEDHFELAVDLLTQAIDLDPNKPELYADRAQANIKLANFPEAVADANKAIELNPSLAKAYLRKGTACMKLEEYQTAKTALETGASLSADKSRFANLIKECDELIAAESYTMPIQEKATAQEDVSPKDVQPEKDLPEQPKVAVAKPKYRLVQLSDCLFPLLALLLCRHEFYQKPDEVVVTIFAKGISKEKLTVDFGEQILSVRINVPGEDAYVFQPRLFGKIIPSRCRYDVLSTKIEIRLVKAESIHWTSLEFTREITVAQRANVSSVTGTPKPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03800 378 SMART tpr_5 36 69 IPR019734 GO:0005515
Seca10g03800 378 SMART tpr_5 70 103 IPR019734 GO:0005515
Seca10g03800 378 SMART tpr_5 2 35 IPR019734 GO:0005515
Seca10g03800 378 SUPERFAMILY HSP20-like chaperones 176 271 IPR008978 -
Seca10g03800 378 Pfam CS domain 178 254 IPR007052 -
Seca10g03800 378 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Seca10g03800 378 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Seca10g03800 378 CDD p23_CS_SGT1_like 181 264 - -
Seca10g03800 378 ProSiteProfiles CS domain profile. 175 264 IPR007052 -
Seca10g03800 378 ProSiteProfiles SGS domain profile. 287 378 IPR007699 -
Seca10g03800 378 PANTHER PROTEIN SGT1 HOMOLOG 1 376 IPR044563 GO:0051087
Seca10g03800 378 FunFam Protein SGT1 homolog A 177 277 - -
Seca10g03800 378 Gene3D Tetratricopeptide repeat domain 1 134 IPR011990 GO:0005515
Seca10g03800 378 Gene3D - 177 266 IPR008978 -
Seca10g03800 378 Pfam Tetratricopeptide repeat 70 102 IPR019734 GO:0005515
Seca10g03800 378 Pfam Tetratricopeptide repeat 37 68 IPR019734 GO:0005515
Seca10g03800 378 Pfam SGS domain 297 376 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03800 Seca-Chr10 78533315 78541652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03800 1 122 U-box Gene Family AT3G07370 26.230 2.12e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03800 K12795 - gmx:100780174 571.622