Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03768 CAAGATCTTAAAATTGTCAACTCGGGCTTTGAGTTGGATGTCTCGGTCTCTAACACCAAAACTCTTGCTGCAACGCCCATAGATTTGCAAAATTTGTCTTCTAATGATACGGCCATTGTTATGGTGGATTCTGATGCCTCAAAAAATATTTCTCACACCATTGGCAAAATGACTTCTATTTACAAAGGAGTTACAAGGCATCGATGGATAGGTAGATATGAGGCGCATCTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGTGTCAAGGTGGATATGAAAAGGAAGAAAAGGCTGCAAGAGCTTATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGCGTTGGAGGACATGCAAAATGTAGGAAAACAAGAATATGTTGCATCATTACGAAGGAATAGCAGTGGCTTTACAAGGGGAACTTCCATATATAGAGGTGTTACAAGGCACCATAAAAAAGGTAAATGGCAAGCAAGGATTAGCGCAGATACAGGGAAAAAAGATCTATACTTGGGAACATTTGGTAGTGAAGAGGACGCGGCAGAGGCATATGACATTGCAACCATCAAGTTTAGAGGTGCAAATGCTATAACTAATTTTGAGATGGATAGATATGATGTTGAAGCTATATCGAATAGTGTTCTTCCAGTTGGTATGGTTGCAAAATGA 717 0.3975 QDLKIVNSGFELDVSVSNTKTLAATPIDLQNLSSNDTAIVMVDSDASKNISHTIGKMTSIYKGVTRHRWIGRYEAHLWDNKCKQEGQAKKGCQGGYEKEEKAARAYDLASLKYWGLSATTNFPVSNYTKALEDMQNVGKQEYVASLRRNSSGFTRGTSIYRGVTRHHKKGKWQARISADTGKKDLYLGTFGSEEDAAEAYDIATIKFRGANAITNFEMDRYDVEAISNSVLPVGMVAK. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03768 238 CDD AP2 59 125 IPR001471 GO:0003700|GO:0006355
Seca10g03768 238 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Seca10g03768 238 PRINTS Ethylene responsive element binding protein signature 199 219 IPR001471 GO:0003700|GO:0006355
Seca10g03768 238 Gene3D AP2/ERF domain 159 219 IPR036955 GO:0003700|GO:0006355
Seca10g03768 238 Gene3D AP2/ERF domain 60 125 IPR036955 GO:0003700|GO:0006355
Seca10g03768 238 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 228 - -
Seca10g03768 238 ProSiteProfiles AP2/ERF domain profile. 159 217 IPR001471 GO:0003700|GO:0006355
Seca10g03768 238 Pfam AP2 domain 159 209 IPR001471 GO:0003700|GO:0006355
Seca10g03768 238 Pfam AP2 domain 60 115 IPR001471 GO:0003700|GO:0006355
Seca10g03768 238 SUPERFAMILY DNA-binding domain 158 218 IPR016177 GO:0003677
Seca10g03768 238 ProSiteProfiles AP2/ERF domain profile. 60 123 IPR001471 GO:0003700|GO:0006355
Seca10g03768 238 SMART rav1_2 60 129 IPR001471 GO:0003700|GO:0006355
Seca10g03768 238 SMART rav1_2 159 223 IPR001471 GO:0003700|GO:0006355
Seca10g03768 238 CDD AP2 158 217 IPR001471 GO:0003700|GO:0006355
Seca10g03768 238 SUPERFAMILY DNA-binding domain 59 125 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03768 Seca-Chr10 76439687 76442204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03768 35 234 AP2-EREBP Transcription Factor Family AT5G57390 63.547 6.26e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca10g03768 AP2 6.6e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03768 K09285 - vvi:100854470 318.546