Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03767 ATGGAGTCTAATAATGAATTTCAACCATTCATGGCAATGCCTAGAATGGAAGATTTCGTAGATTTTCAAATAGAGACTCGAGATTCCTCTTCACTCAACCAGATACATAATCATGGCTTTATCCCTGTACATTTCAACAACCAGCAAGATCTGAAAACTGCCAACTCGGGCTTTGAGTTGGATGACTCGGTCTCTAACACCGAATCTCTTGCTGCTACCCCCATAGATTTGCAAAATTTGTCTTCTAATGATAAGGCCATTGTTATGGTGGACTCTGATGCCTCAAAAAAAATTTCTCACACCATTGGCAAAATTACTTCTATTTACAAAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAGGTCCATCTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGCATCAAGGTGGATATGAAAAGGAAGAAAAGGCTGCAAGAGCATATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGAGTTGGAGGACATGCAAAATGTAGGAAAACAAGAATATATTGCATCATTACGAAGGAATAGCAGTGGCTTTACAAGGGGAACTTCCATATATAGAGGAACCATAAAAAAAGGTAAATGGAAAGCAAGGATTAGCGCAGATACAGGAAAAAAAGATCTATACTTGGGAACATTTGGTAGTGAAGAGGAAGCAGCAGAGGCATATGACATTGCAGCCATCAAGTTTTGA 759 0.3939 MESNNEFQPFMAMPRMEDFVDFQIETRDSSSLNQIHNHGFIPVHFNNQQDLKTANSGFELDDSVSNTESLAATPIDLQNLSSNDKAIVMVDSDASKKISHTIGKITSIYKGVTRHRWTGRYEVHLWDNKCKQEGQAKKGHQGGYEKEEKAARAYDLASLKYWGLSATTNFPVSNYTKELEDMQNVGKQEYIASLRRNSSGFTRGTSIYRGTIKKGKWKARISADTGKKDLYLGTFGSEEEAAEAYDIAAIKF. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03767 252 ProSiteProfiles AP2/ERF domain profile. 108 171 IPR001471 GO:0003700|GO:0006355
Seca10g03767 252 SUPERFAMILY DNA-binding domain 207 252 IPR016177 GO:0003677
Seca10g03767 252 SUPERFAMILY DNA-binding domain 107 173 IPR016177 GO:0003677
Seca10g03767 252 CDD AP2 107 173 IPR001471 GO:0003700|GO:0006355
Seca10g03767 252 CDD AP2 206 252 IPR001471 GO:0003700|GO:0006355
Seca10g03767 252 ProSiteProfiles AP2/ERF domain profile. 201 252 IPR001471 GO:0003700|GO:0006355
Seca10g03767 252 SMART rav1_2 108 177 IPR001471 GO:0003700|GO:0006355
Seca10g03767 252 SMART rav1_2 207 252 IPR001471 GO:0003700|GO:0006355
Seca10g03767 252 Gene3D AP2/ERF domain 108 173 IPR036955 GO:0003700|GO:0006355
Seca10g03767 252 Gene3D AP2/ERF domain 203 252 IPR036955 GO:0003700|GO:0006355
Seca10g03767 252 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 66 252 - -
Seca10g03767 252 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Seca10g03767 252 PRINTS Ethylene responsive element binding protein signature 153 173 IPR001471 GO:0003700|GO:0006355
Seca10g03767 252 Pfam AP2 domain 108 163 IPR001471 GO:0003700|GO:0006355
Seca10g03767 252 Pfam AP2 domain 213 251 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03767 Seca-Chr10 76285874 76293897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03767 84 252 AP2-EREBP Transcription Factor Family AT5G17430 65.714 2.11e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca10g03767 AP2 1.6e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03767 K09285 - zju:107425151 271.166