Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03765 TTTGATTTGACATTTGCAGCATGGAAAAACTCTAAATTTCAGGAGCTAAACCATAACCAAGCACAAATTGGGGTTTCGTCGACCATTCTCACAAGCTATATGGAGTCTAATAATGAATTTCAACCATTCATGGCAATGCCTAGAATGGAAGATTTCATAGATTTTCAAATAGAGACTCAAGATTCCTCTTCACTCAACCAGATACATAATCATGGCTTTATCCCTGTACATTTCAACAACCAGCAAGATCTGAAAACTGCTAACTCGGGCTTTGAGTTGGATGACTCAGTCTCTAACACCGAATCTCTTGCTGCTACCCCCATAGATTTACAAAATTTGTCTTCTAATGATAAGGCCATTGTTATGGTGGACTCTGATGCCTCAAAAAAAAATTCTCACACCATTGGCAAAATGACTTCTATTTACAAAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAGGCGCATCTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGCGTCAAGGTGGATATGAAAAGGAAGAAAAGGCTGCAAGAGCATATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGAGTTGGAGGACATGCAAAATGTAGGAAAACAAGAATATATTGCATCATTACGAAGGAATAGCAGTGGCTTTACAAGGGGAACTTCCATATATAGAGGTGTTACAAGGAACCATAAAAAAGGTAAATGGCAAGCAAGGATTAGCGCAGATACAGGCAAAAAAGATCTATACTTGGGAACATTTGGTAGTGAAGAGGAAGCAGCAGAGGCATATGACATTGCAGCCATCAAGTTTCGAGGTGCAAACGCTATAACTAATTTTGAGATGAGTAGATATGATGTGGAAGCTATATCGAATAGTGTTCTTCCAGTTAGTATGGCTGCAAAACGAATGAGGTTTTCTAAAGAATTAGAAAAGATAGCTCCTATGACTAGTGGTCAGCAACCTTACAGTACAAATGTGAGTAGTACCATTAATATCCCAACCATTCAGCCAGTTGCTGCTATACCAGATAATCCTGCAACAACATTTTATCCCCCAAACCTTTTCCCCAAATTTCATCCTATCAATGATGGAAGTGGCATAATAGAGCCTTCTGGAACTACAACTAATGCAACCACACTAAATGCAATGGCAAAAAGAGCTAGATTCTTTATATTGCCTCACCTGTCCTATTGA 1248 0.391 FDLTFAAWKNSKFQELNHNQAQIGVSSTILTSYMESNNEFQPFMAMPRMEDFIDFQIETQDSSSLNQIHNHGFIPVHFNNQQDLKTANSGFELDDSVSNTESLAATPIDLQNLSSNDKAIVMVDSDASKKNSHTIGKMTSIYKGVTRHRWTGRYEAHLWDNKCKQEGQAKKGRQGGYEKEEKAARAYDLASLKYWGLSATTNFPVSNYTKELEDMQNVGKQEYIASLRRNSSGFTRGTSIYRGVTRNHKKGKWQARISADTGKKDLYLGTFGSEEEAAEAYDIAAIKFRGANAITNFEMSRYDVEAISNSVLPVSMAAKRMRFSKELEKIAPMTSGQQPYSTNVSSTINIPTIQPVAAIPDNPATTFYPPNLFPKFHPINDGSGIIEPSGTTTNATTLNAMAKRARFFILPHLSY. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03765 415 PRINTS Ethylene responsive element binding protein signature 280 300 IPR001471 GO:0003700|GO:0006355
Seca10g03765 415 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Seca10g03765 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 99 327 - -
Seca10g03765 415 SMART rav1_2 141 210 IPR001471 GO:0003700|GO:0006355
Seca10g03765 415 SMART rav1_2 240 304 IPR001471 GO:0003700|GO:0006355
Seca10g03765 415 Pfam AP2 domain 240 290 IPR001471 GO:0003700|GO:0006355
Seca10g03765 415 Pfam AP2 domain 141 196 IPR001471 GO:0003700|GO:0006355
Seca10g03765 415 ProSiteProfiles AP2/ERF domain profile. 240 298 IPR001471 GO:0003700|GO:0006355
Seca10g03765 415 SUPERFAMILY DNA-binding domain 239 300 IPR016177 GO:0003677
Seca10g03765 415 SUPERFAMILY DNA-binding domain 140 206 IPR016177 GO:0003677
Seca10g03765 415 CDD AP2 239 300 IPR001471 GO:0003700|GO:0006355
Seca10g03765 415 Gene3D AP2/ERF domain 141 206 IPR036955 GO:0003700|GO:0006355
Seca10g03765 415 Gene3D AP2/ERF domain 240 300 IPR036955 GO:0003700|GO:0006355
Seca10g03765 415 ProSiteProfiles AP2/ERF domain profile. 141 204 IPR001471 GO:0003700|GO:0006355
Seca10g03765 415 CDD AP2 140 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03765 Seca-Chr10 76214201 76217273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03765 27 415 AP2-EREBP Transcription Factor Family AT5G65510 45.316 6.40e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca10g03765 AP2 4.8e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03765 K09285 - cave:132171254 394.43