Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03764 ATGACTTCTATTTACAAAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAGGCGCATTTGTGGGATAATAAGTGCAAACAAGAGGGTCAAGCAAAGAAAGGGCGTCAAGGTTTTTTACTTGGATATGAAAAGGAAGAAAAGGCTGCAAGAGCATATGATTTAGCTTCTCTAAAGTATTGGGGACTATCAGCCACCACTAACTTTCCTGTTTCCAATTATACAAAGGAGTTGGAGGACATGCAAAATGTAGGAAAACAAGAATATATTGCATCATTACGAAGGAATAGCAGTGGCTTTACAAGGGGAACTTCCATATACAGAGGTGTTACAAGGAACCATAAAGAAGGTAAATGGCAAGCAAGGATTGGCGCAAATACAGGAAAAAAAGATCTATACTTGGGAACATTTGGTAGTGAAGAGGAAGCAGCAGAGGCATATGACATTGCAGCCATCAAGTTTCGAGGTGCAAACGCTATAACTAATTTTGAGATGAGTAGATATGATGTGGAAGCTATATCGAATAGTTTTCTTCTAGTTAGTATGGCTGCAAAACGAATGAGGTTTTCTAAAGAATTAGAAAAGATAGCTCCTATGACTAGTGGTCAGCAACCTTACAGTACAAATGTGAGTAGTACCATTGATATCCCAACCATTCAGCCAGTTGCTGCTATACCAGATAATCCTGCAACAAAATTTTATCCCCCAAACCTTTTCCCCAAATTTCATCCTACCAATGATGGAAGTGGCATAATAGAGCCTTCTGGAACTACAACTAATGCAGCCACACTAAATGCAATGGCAAAAAGAGCTAGATTCTTTACATTGCCTCACCTGTCCTATTGA 846 0.3936 MTSIYKGVTRHRWTGRYEAHLWDNKCKQEGQAKKGRQGFLLGYEKEEKAARAYDLASLKYWGLSATTNFPVSNYTKELEDMQNVGKQEYIASLRRNSSGFTRGTSIYRGVTRNHKEGKWQARIGANTGKKDLYLGTFGSEEEAAEAYDIAAIKFRGANAITNFEMSRYDVEAISNSFLLVSMAAKRMRFSKELEKIAPMTSGQQPYSTNVSSTIDIPTIQPVAAIPDNPATKFYPPNLFPKFHPTNDGSGIIEPSGTTTNAATLNAMAKRARFFTLPHLSY. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03764 281 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Seca10g03764 281 Gene3D AP2/ERF domain 4 72 IPR036955 GO:0003700|GO:0006355
Seca10g03764 281 FunFam AP2-like ethylene-responsive transcription factor ANT 3 72 - -
Seca10g03764 281 SUPERFAMILY DNA-binding domain 3 72 IPR016177 GO:0003677
Seca10g03764 281 ProSiteProfiles AP2/ERF domain profile. 4 70 IPR001471 GO:0003700|GO:0006355
Seca10g03764 281 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
Seca10g03764 281 CDD AP2 105 166 IPR001471 GO:0003700|GO:0006355
Seca10g03764 281 SMART rav1_2 4 76 IPR001471 GO:0003700|GO:0006355
Seca10g03764 281 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Seca10g03764 281 Pfam AP2 domain 106 156 IPR001471 GO:0003700|GO:0006355
Seca10g03764 281 Pfam AP2 domain 4 62 IPR001471 GO:0003700|GO:0006355
Seca10g03764 281 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Seca10g03764 281 PRINTS Ethylene responsive element binding protein signature 146 166 IPR001471 GO:0003700|GO:0006355
Seca10g03764 281 CDD AP2 3 72 IPR001471 GO:0003700|GO:0006355
Seca10g03764 281 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 192 - -
Seca10g03764 281 SUPERFAMILY DNA-binding domain 105 166 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03764 Seca-Chr10 76112649 76118683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03764 2 194 AP2-EREBP Transcription Factor Family AT1G51190 69.744 2.91e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca10g03764 AP2 2.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03764 K09285 - gmx:100795280 354.755