Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03762 ATGGAACAGAAGCACGTTCTTTTGTCAGCATTGAGTGTTGGGGTTGGGTTGGGTGTGGGGCTTGGATTGAGTTCAGGAGAGGCTGTTCACAAATGGGTTGGAGGAAATCGTTATTCTAATGAGGTTTCTGGGGAGCAGATTGTGGAGGAGCTCAAGAAACTGATGGTTGATGGAAAGGACAGCAAAGTTACATTTGATGAGTTTCCTTATTACTTAAGTGAAAGAACTCGAGTTTTGTTGACAAGTGCTGCATATGTTCATTTAAAACATCTCAACTATTCCAAGCACACCAGGAACCTCTCACCAGCAAGCAGGGCTATTTTGCTCTCTGGTCCAGCAGAACTTTACCAGCAAATGCTTGCCAGAGCTTTAGCACATTACTTTGAATCGAAGTTGCTATTGTTAGATATTACAGACTTCTCTGTGAAGTTACAGAACAAATATGGATGTTCTAGAAAAGAACCATCTTTCAAAAGGTCAATATCGGAGATGACTTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCAATTCTGCCTTCAACAAGCGAAACCAGAGGAACTCTTCGTCAACAAAGCAGTACTGTTGAAAGTTCCAGTAATCCTGCAAAGCTTCGGAGGAATGCTTCTGCTGCATCTGATATAAGTAGCACCGCTTCCCAGAGTGGTCCAACAATTGCAGCTCCTTTAAGGCGCACAAGTAGCTTGTGTTTTGATGAAAAGCTCTTTGTGCAGTCACTATACAAGGTTTTGGTTTCTATCTCAGAAACTAGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTGGTTCTCCAATCACCAAGGTTATATAATCTACTACAAAAAATGATAAAGAAATTGTCAGGCTCGGTGTTGATACTTGGTTCCCAGATATTAGATTCAGAAGATGATTGCAAAGATGTTGATGAAAGGCTCACTATGTTATTCCCCTACAACATTGATATCAAACCTCCTGAAGATGAAATTCATATTGGGAGCTGGAAAGGCCAACTGGAAGAGGACATGAAAATTATTCAGTTTCAAGATAACAGAAATCACATTGCTGAAGTACTTGCAGCAAATGACATTGATTGTGATGACTTGAATTCAATCTGCCATGCAGACACTATGATGCTCAGTAATTATATTGAAGAAATTGTGGTATCTGCAATATCTTACCATTTGATGAATACCAAGGATCCGGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCTAACAAGGAAAATGCTGGAGAAGATATAACTGGTGCAAAGAATGATGTGCGGTGTGACAACCAAGCACCTGAAAATAAAAATGAGACAGAGAAATCCATCCCTGTAACAAAGAAAGATGGTGAAAGTCCTGCACCTGCAAAAGCAGAAGTTCCTGACAATGAGTTTGAGAAGCGTATACGACCAGAGGTTATCCCTGCAAATGAGATAGGGGTCACATTTTCAGATATTGGTGCAATGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGACCAGACCTCTTCAAAGGTGGGCTTCTAAAGCCATGCAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGAAAAACCATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATTAATGTTTCAATGTCCACCATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCAGAGCTCTATTCACATTAGCAGCTAAGGTTGCCCCAACTATTATCTTTGTTGATGAGGTTGACAGCATGCTTGGGCAGAGGACTAGAGTTGGAGAGCATGAGGCCATGAGGAAGATTAAAAATGAATTCATGACACACTGGGATGGGCTATTAACACAACCTGGTGAGCAAATCCTTGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGTTTTGAGCGCAGGATCATGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCCTGAAAACACTCCTGGCTAAGGAAAAATATGAAAACTTGGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCATCACTGCAGCTTATCGACCTGTTAGGGAGCTAATACAGCAGGAAAGAATGAAGGAAATGGAAAAGAAGAAAAAAGAGGCAGAAGGTCAAAACTCCGAAGATGCTTCAAATGATAAAGATAAAGAAGACCAAGAAATTTCCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGAGTCAGGTAGGGTGTGAAATGACTATGAAGCACAATTTAACATCATTCACATAA 2400 0.4083 MEQKHVLLSALSVGVGLGVGLGLSSGEAVHKWVGGNRYSNEVSGEQIVEELKKLMVDGKDSKVTFDEFPYYLSERTRVLLTSAAYVHLKHLNYSKHTRNLSPASRAILLSGPAELYQQMLARALAHYFESKLLLLDITDFSVKLQNKYGCSRKEPSFKRSISEMTLERMSGLFGSFSILPSTSETRGTLRQQSSTVESSSNPAKLRRNASAASDISSTASQSGPTIAAPLRRTSSLCFDEKLFVQSLYKVLVSISETSSIILYIRDVEKLVLQSPRLYNLLQKMIKKLSGSVLILGSQILDSEDDCKDVDERLTMLFPYNIDIKPPEDEIHIGSWKGQLEEDMKIIQFQDNRNHIAEVLAANDIDCDDLNSICHADTMMLSNYIEEIVVSAISYHLMNTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENAGEDITGAKNDVRCDNQAPENKNETEKSIPVTKKDGESPAPAKAEVPDNEFEKRIRPEVIPANEIGVTFSDIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTQPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLAKEKYENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQQERMKEMEKKKKEAEGQNSEDASNDKDKEDQEISLRPLNMEDMRQAKSQVGCEMTMKHNLTSFT. 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03762 799 MobiDBLite consensus disorder prediction 438 493 - -
Seca10g03762 799 Gene3D - 507 679 IPR027417 -
Seca10g03762 799 SMART AAA_5 544 681 IPR003593 GO:0016887
Seca10g03762 799 Pfam AAA+ lid domain 700 744 IPR041569 -
Seca10g03762 799 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 47 787 - -
Seca10g03762 799 MobiDBLite consensus disorder prediction 426 493 - -
Seca10g03762 799 ProSitePatterns AAA-protein family signature. 651 670 IPR003960 GO:0005524|GO:0016887
Seca10g03762 799 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 507 682 - -
Seca10g03762 799 MobiDBLite consensus disorder prediction 184 225 - -
Seca10g03762 799 Coils Coil 730 759 - -
Seca10g03762 799 Pfam ATPase family associated with various cellular activities (AAA) 548 678 IPR003959 GO:0005524|GO:0016887
Seca10g03762 799 MobiDBLite consensus disorder prediction 739 772 - -
Seca10g03762 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 738 IPR027417 -
Seca10g03762 799 MobiDBLite consensus disorder prediction 739 784 - -
Seca10g03762 799 Gene3D - 680 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03762 Seca-Chr10 75811090 75819108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03762 508 739 Calmodulin-binding Proteins AT3G56690 39.831 1.13e-43 169