Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03724 ATGAAGATGGAGGATTTTTGGAGCATGATTTGTTGGGATTCTGATTGTTCTAAGACTGGACAAAAGCCTTTCTGTTATGATTTCAAGTTTTTGAATGATCCTTCCTCATGCATCAACCATTTGATGGTCATTTGCTTTGATGTGATATTGTTGATCATGTTGTCATTTATTATGATCCAGAAGTACTTGTTGAAACCATTTCAAGGTCTAACCCGGGTGCAAAGATATTCAAACTTGCAACTAGTTTCTGCCATAATCAATGGCTCTCTTGGGTTGCTGCATTTGTGTTTAGGAATTTGGGTTTTGGAGGAGAAGTTAAGGAAAACCCACAAAGCTTTTCCTCTTAACTGGTGGTTGCTAGAACTCTTTCAAGGGTTAACATGGTTGTTAGTAGGCTTAACTGTAAGTCTTCAACTAAGAAAACTCCCAAGAGCATGGTTGTGGCTGTTTTCTATTCTTGTATTCCTTGTTTCTAGCATCTTTTGTGCTTTATCCATGTCTTATGCTATTAGCAGCAGAGAAGTGTCCCTCAAGGCAGCTTTAGATGTTCTATCTTTTCCAGTAGCAATTTTACTGCTCTTATGCACATATAAAGCAGGAAAATGTGAAGACACTGATAGAGAAAATGATGAAAGCCTTTATGCCCCTTTGAATAGCCAGTTTAATGAAGTTGATCCTATTAGCTATGTAACACCATTTGCCAAAGCTGGATTCTTGAGTAAGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGAGAAAACACTTCAGGATGAGGATATCCCAAAGTTGCGTGAGTCAGATCAAGCAGAAAGTTGTTATTTGTTGTTTGAAGAACAATTGAAGAGAAAAAAACGAACAGAACCATCATCACACTCATCAGTTTTATGGACAATAATTTTGTGCCACCAGAGAGAGATTTTGATAACAGGATTCTTGGCTTTGCTCAAGGTACTCACTCTATCTTCTGGTCCTCTCCTTCTGAATGGCTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTACTTATTGGCCATATCACTTTTCTTTATAAAGATCATAGAATCTCTATCAGAAAGGCAATGGTATTTCCGAAGTAGACTTGTTGGCATGAAAGTTAGGTCATTTCTTACTGCAGCCATTTATAAAAAAGCATTAAGGTTATCCAATGGTGCTAGATTGATTCACTCTGGTGGTGAGATAATGAATTATGTGACTGTTGATGCTTATAGGATTGGAGAATTTCCATATTGGTTTCACCAAACTTGGACAACAATCCTCCAACTATGCATTGCATTAGTAATTCTTTTTCGTGCCATTGGACTTGCAACAATTGCCTCATTGGTGGTGATAGTTTTCACAGTGCTCTGCAACACTCCACTAGCAAAGTTACAACACAAGTTTCAAAGCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAAGTGCTGAAGCTATATGCATGGGAAACTCATTTTAAAAATGCTATAGAAAGGTTAAGAAATGTGGAACTCAAAATGTTATATGCAGTGCAACTAAGAAAGACATACGGCATATTTCTCTTTTGGTCTGCACCTATGTTGGTCTCTGCTGCTTCTTTTCTGGCATGTTACTTCCTAAATATTCCCTTACATGCAAATAATGTTTTCACTTTTGTGGCAACTTTGCACCTTGTGCAACAGCCAATTACAGCCATCCCGGATGTTATTGGGGTGATCATTCAGGCAAGAGTTGCATTTGCTAGGATTGTTAAATTCCTTGAGGCACCGGAACTACAGAGTACAAGTTTCAGGAACAAGTGCTTTAGTGACAAACTTAGAGGTTCAATTTCAATAAAATCAGGAGACTTTTCATGGGAAGGTAATGTGTCAAAGCCAACATTGAGGAATATAAATTTGGAGGTTAGGCATGGTCAAAAGCTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACTCTCTTAGCAACAATTCTTGGAGAAGTTCCTAATACAAAGGGAACTATTGATGTTCATGGGAAGTTTGCATATGTTTCTCAATCAGCATGGATACAGACAGGTACAATACGAGAAAATATTTTGTTTGGATCTGATTTGGATGCTCAAAGGTATCAAGAAACACTTCATAAATCTTCACTAATGAAGGACCTTGAGTTGCTTCCCCATGGTGACCTCACTGAAATAGGCGAGAGAGGAGTTAACTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCTCGTGCACTTTATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCTCACACTGCCACAAGTTTATTCAATGAATACATCATGAAAGGACTTAAAGGGAAAACTGTCTTACTCGTGACCCATCAAGTTGACTTCCTCCCGGCGTTTGATTCTGTTCTGTTGATGTCAGATGGGGAAATCCTACAAGCTGCTCCTTATCACCATCTATTGGCCTCAAGCCAGGAATTCCAAGAACTTGTCAATGCTCACAAGGAAACTGCTGGTTCTGGCCATATTGTGAAAGTTACTTCTTCCCAAAGACAATCAACTTCTGCTAAAGAGATTACACAAGCTTTCATGGATAAGAAGTTTAAAGCAGCAAATGGAAATCAATTAATAAAGCAAGAAGAGAGAGAAAGAGGAGACACAGGGTTGAAGCCTTACTTACAATATATGAACCAGATGAAAGGTTATATATACTTCTTTGGGGCTTCCTTTTGTCACCTTACATTTGTGATTTGTCAGATATTGCAAAACTCATGGCTAGCTGCCAATGTGGACAATCCCCATGTCAACACACTACAATTGATCATAGTTTACTTCCTAATTGGAGCTATTTCAGCAATTTTCTTGTTAATCAGAAGTTTACTAATAGTTGCTCTGGGTCTTCAATCATCAAGATATTTGTTTTTAAAGTTAATGAACTCTCTTTTCCGCGCACCAATGTCTTTTTATGACTCTACACCATTGGGAAGGATACTTAGTAGGGTCTCATCAGATTTGAGCATTATGGATCTTGATATCCCATTTACCATTGCTTTTGTTGTGGGAGGTACTATAAATTGTTATTCTAATCTTACAGTTTTAGCAGTGGTCACTTGGCAAGTCTTGGTTGTCTCTATACCAATGGTTTACATTGCAATTCGCTTGCAGAGATACTACTTTGCCTCAGCAAAAGAAGTGATGCGGATGAATGGCACAACAAAGTCCTTTGTAGCTAATCATGTTGCTGAAACTGTTGCTGGAGCTGTGACAATAAGGGCATTTGAGGAGGAAGATCGTTTCTTTGAAAAGAATCTTGATCTAATTGATATAAATGCGAGTGCTTTCTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCAACGGTTAGAAATAGTTAGTGCAATTGTTCTAGCCTCAGCAGCATTTTGCATGGTTATGCTTCCACCTGGAACTTTCGCCTCTGGATTTATTGGCATGGCACTATCGTATGGCCTTTCACTAAACGCTTCTTTAGTATTTTCAATTCAAAGTCAATGCACTATTGCAAACCATATAATATCTGTAGAGAGGCTAAATCAATATATGCAAATAGAAAGTGAGGCTCAAGAAGTAATAGAAGGAAATCGTCCTCCTTTGAATTGGCCAAATGAGGGAAAAGTAGAAATAAATGACTTGAAGATACGATATAGGCCTGATGGACCACTTGTACTTCATGGGATCACATGCACATTCAAGGCAGGGCACAAAATTGGTATTGTTGGTAGGACAGGTAGTGGGAAGTCCACTCTTATAAGTGCTCTATTTCGTCTTGTGGAGCCAGCAGGAGGAAAAATTGTAGTTGATGGCATAAACATCTCATCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGGACAGTTAGATATAATTTGGACCCTTTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTTGGAAAGTGTCAATTGAGAGAAGTTGTCCAAGAGAAAGAAGGCTTGAATTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTCTGTTTGGGGCGTGCTCTTTTGAGAAGAAGTAGGATACTGGTGCTGGATGAAGCAACGGCATCAATTGATAATGCAACTGATTTGATTCTGCAAAAAACCATTAGGACTGAGTTTGCAGACTGTACAGTGATCACAGTAGCCCACAGGATACCAACTGTAATGGATTGCACTATGGTTCTTTCCATCAGTGATGGAAAATCGGCTGAGTATGATGAGCCAATGAGCTTGATGAAGAGAGAAGGATCGCTGTTCAGGCAGCTTGTCAAGGAATACTGGTCTCATTTTCACTCTGCAGAAACGCATTGA 4443 0.3901 MKMEDFWSMICWDSDCSKTGQKPFCYDFKFLNDPSSCINHLMVICFDVILLIMLSFIMIQKYLLKPFQGLTRVQRYSNLQLVSAIINGSLGLLHLCLGIWVLEEKLRKTHKAFPLNWWLLELFQGLTWLLVGLTVSLQLRKLPRAWLWLFSILVFLVSSIFCALSMSYAISSREVSLKAALDVLSFPVAILLLLCTYKAGKCEDTDRENDESLYAPLNSQFNEVDPISYVTPFAKAGFLSKMSFWWLNPLMKRGQEKTLQDEDIPKLRESDQAESCYLLFEEQLKRKKRTEPSSHSSVLWTIILCHQREILITGFLALLKVLTLSSGPLLLNGFILVAEGNESFKYEGYLLAISLFFIKIIESLSERQWYFRSRLVGMKVRSFLTAAIYKKALRLSNGARLIHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTILQLCIALVILFRAIGLATIASLVVIVFTVLCNTPLAKLQHKFQSKLMVAQDERLKASSEALVNMKVLKLYAWETHFKNAIERLRNVELKMLYAVQLRKTYGIFLFWSAPMLVSAASFLACYFLNIPLHANNVFTFVATLHLVQQPITAIPDVIGVIIQARVAFARIVKFLEAPELQSTSFRNKCFSDKLRGSISIKSGDFSWEGNVSKPTLRNINLEVRHGQKLAICGEVGSGKSTLLATILGEVPNTKGTIDVHGKFAYVSQSAWIQTGTIRENILFGSDLDAQRYQETLHKSSLMKDLELLPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNEYIMKGLKGKTVLLVTHQVDFLPAFDSVLLMSDGEILQAAPYHHLLASSQEFQELVNAHKETAGSGHIVKVTSSQRQSTSAKEITQAFMDKKFKAANGNQLIKQEERERGDTGLKPYLQYMNQMKGYIYFFGASFCHLTFVICQILQNSWLAANVDNPHVNTLQLIIVYFLIGAISAIFLLIRSLLIVALGLQSSRYLFLKLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDLDIPFTIAFVVGGTINCYSNLTVLAVVTWQVLVVSIPMVYIAIRLQRYYFASAKEVMRMNGTTKSFVANHVAETVAGAVTIRAFEEEDRFFEKNLDLIDINASAFFHSFASNEWLIQRLEIVSAIVLASAAFCMVMLPPGTFASGFIGMALSYGLSLNASLVFSIQSQCTIANHIISVERLNQYMQIESEAQEVIEGNRPPLNWPNEGKVEINDLKIRYRPDGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGINISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLGKCQLREVVQEKEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKSAEYDEPMSLMKREGSLFRQLVKEYWSHFHSAETH. 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03724 1480 CDD ABCC_MRP_domain1 626 826 - -
Seca10g03724 1480 FunFam ABC transporter C family member 10 294 607 - -
Seca10g03724 1480 CDD ABCC_MRP_domain2 1233 1452 - -
Seca10g03724 1480 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524|GO:0016887
Seca10g03724 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 849 IPR003439 GO:0005524
Seca10g03724 1480 Pfam ABC transporter 1252 1399 IPR003439 GO:0005524
Seca10g03724 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 849 IPR027417 -
Seca10g03724 1480 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 233 1468 - -
Seca10g03724 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1467 IPR027417 -
Seca10g03724 1480 Gene3D ABC transporter type 1, transmembrane domain 882 1217 IPR036640 GO:0005524|GO:0016020
Seca10g03724 1480 Pfam ABC transporter 644 778 IPR003439 GO:0005524
Seca10g03724 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g03724 1480 CDD ABC_6TM_ABCC_D2 921 1210 IPR044726 GO:0140359
Seca10g03724 1480 FunFam ABC transporter C family member 3 1218 1469 - -
Seca10g03724 1480 SUPERFAMILY ABC transporter transmembrane region 918 1215 IPR036640 GO:0005524|GO:0016020
Seca10g03724 1480 SMART AAA_5 1261 1443 IPR003593 GO:0016887
Seca10g03724 1480 SMART AAA_5 653 826 IPR003593 GO:0016887
Seca10g03724 1480 FunFam ABC transporter C family member 10 610 862 - -
Seca10g03724 1480 Gene3D - 602 873 IPR027417 -
Seca10g03724 1480 Gene3D - 1219 1469 IPR027417 -
Seca10g03724 1480 FunFam ABC transporter C family member 5 884 1216 - -
Seca10g03724 1480 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Seca10g03724 1480 Gene3D ABC transporter type 1, transmembrane domain 298 601 IPR036640 GO:0005524|GO:0016020
Seca10g03724 1480 SUPERFAMILY ABC transporter transmembrane region 299 604 IPR036640 GO:0005524|GO:0016020
Seca10g03724 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1468 IPR003439 GO:0005524
Seca10g03724 1480 Pfam ABC transporter transmembrane region 311 577 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g03724 1480 Pfam ABC transporter transmembrane region 919 1158 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g03724 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1198 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03724 Seca-Chr10 73125673 73132653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03724 447 882 Calmodulin-binding Proteins AT2G36910 25.054 6.25e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03724 K05666 - gmx:100787314 2448.7