Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03704 ATGATTGTCAAACGCTTGTTAATTTGCAAGGTTAATAGGCCTCCACTATCGTTGTCAAGGTTGATTAAGTTCATGAAGGGCAAGACTGGACAAGCAAGAATAGAGAAGGCAGGTGGTGAATGCTTGACATTTTATCAGTTGACTACTAGGGCCACTTTAGGACAGAACATGGTTGTCGCAATTAAGCAACTTGACCCAAATGGACTGCAAGGGAATAGGGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTGCACGATATTGCTCCTGGAAAGAAACGACTTGACTGGAATACACGAATGAAAATAGCTGCTGGGGCAGCAAAGGGATTGGTTGATGATTTAAAAGCAGCAGAACATAAAATGAATTGCCAACTGCTCACACCAATCCTTAGACCATTCTACGAGTGA 513 0.4172 MIVKRLLICKVNRPPLSLSRLIKFMKGKTGQARIEKAGGECLTFYQLTTRATLGQNMVVAIKQLDPNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIAPGKKRLDWNTRMKIAAGAAKGLVDDLKAAEHKMNCQLLTPILRPFYE. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03704 170 SUPERFAMILY Ribosomal proteins L15p and L18e 3 59 IPR036227 -
Seca10g03704 170 Gene3D Transferase(Phosphotransferase) domain 1 32 146 - -
Seca10g03704 170 ProSiteProfiles Protein kinase domain profile. 18 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03704 170 PANTHER OS07G0668900 PROTEIN 52 145 - -
Seca10g03704 170 Pfam Protein tyrosine and serine/threonine kinase 53 145 IPR001245 GO:0004672|GO:0006468
Seca10g03704 170 SUPERFAMILY Protein kinase-like (PK-like) 50 145 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03704 Seca-Chr10 71891727 71894111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03704 57 145 Glycoside Hydrolase AT3G07070 76.404 3.70e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca10g03704 PK_Tyr_Ser-Thr 2.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03704 - - cpap:110809902 178.718