Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03694 ATGGCAGATCTTGCTAGCTACGGGAATGCCGACCGTGACATCGAACAAGCATTAATTGCTTTGAAAAAGGGTGCCCAACTGCTTAAATATGGTCGTAAGGGGAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCATCTTTAATCTGGATTTCAAGTAGTGAAGAAAGAATTCTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGTCAAAGAACTGCTGTTTTTCAACGTTATCTGCGTCCTGAGAAGGACTATTTGTCCTTTTCACTTATTTATAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTTCTGGTCTCAAAGCACTGATATCTTCTGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGATGGGGGCCTCAATCTTGATGATAGCAGAGACTTAACATCAAATAGTCCAAGTGAAAGTTCAGCTAGCGCGTCACGTGACATTAGTTCTCCTGACATTTCTGTGAGTCTTCCAAATACTTCTCCAAAGTCCTTTCGTCCTGACAGTACCTTAAATTCTGAAAGGTCACATGCACCATCAGACCCAACAAATATGCAAGTAAAAGGATCTGGTTCAGATGCTTTTCGTGTTAGTGTGTCAAGTGCCCCCAGCACATCTAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTATACATATGGGGGGAGATTATCTGTGAAAACTTGAAAGTTGGTACTGATAAAAGTGTCACTTATTTCAGCCCGAGGGCAGATGTGCTTCTCCCTAGATCACTAGAATCCAATGTAGTTTTAGATGTACACCATATAGCGTGTGGTGTTAGACATGCTTCTTTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCGGGAGGACACCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCTTCTAGTTGAAGCATTGACTTCTACAGCTGTTGATTTTGTTGCCTGTGGGGAGTTCCATTCCTGTGCTGTCACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGATTACTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCATTAGAGGGACTTAAAGTTGCATTTGTTGCTTGTGGTCCATGGCACACAGCTTTGATAACTTCAACTGGGCAGCTTTTCACATTTGGTGATGGAACTTTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTTTCATATCCAAGAGAAGTGGATTCCTTATCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGCAACACAATCTAGTGCAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGGCATGGGGACAAGGAGGCGCGGCTTAAACCAACTTGTGTGCCTGCACTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGTAGGCCTGACAACATCTGGGCGTGTTTTTACTATGGGGAGTACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTGCCCTGCTTGGTTGGAGACAAGATTGCTGGGGAATCCATTGAAGAAATTGCATGTGGTGCATATCATGTGGCTGTTTTAACATCCAAAAATGAAGTTTTTACCTGGGGTAAGGGGGCAAATGGGAGATTGGGTCATGGAGATCTTGAAGATCGAAAAACACCGACATTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGCTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGACTTGTGCACTGCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCTGCACTGGCACCTAATCCTGGCAAGCCATATCGTGTGTGTGATTCTTGTTATGCAAAATTGAATAAGGTTGCAGAAGCTAACAATAATAATCGGAGGAATGCTTTGCCACGTCTGTCGGGTGAAAACAAGGACAGGTTAGACAAGTCTGAGCTAAGACTGTCCAAGTCAGTAATTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGAAAGAAAGCTGATACGTTCTCACTAGTTCGCACCTCACAAGCACCTTTGCTACAGCTGAAAGATGTTGTCTTCTCCACTGCTGTTGATCTGAGACGAACAGTTCCAAGACCAGTGATTGCACCATCTGGAGTAAGTTCCAGGTCTGTGTCCCCTTTCTCGAGAAGACCAAGCCCCCCTCGTTCGGCCACACCTATTCCAACAACATCAGGACTTTCCTTCTCCAAAAGTATTGCTGATAGTTTGAAGAAAACTAATGAACTTCTAAATCAAGAAGTGCAGAAGTTACGTACTCAGGTCGAGAGCCTGATTAAAAGATGTGAACTACAAGAATTAGAGCTTCAAAGGTCAGCGAAAAAGACTCAAGAAGCTATGGCACTGGCTGCTGATGAATCTGCTAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACGGCACAGCTCAAAGATCTCGCTGAGAAACTTCCTCCTGGAGTTTATGATGCCGAGAACAGTAAACCAGCTTACCTACCAAATGGTCTTGAGTCAAATGGCATCCACCATCCAGATTCAAATGGGGAGCTGAACTCCAGGACCGAATCAATCAGTGGATCTAGTTTGGCTTCCATAGGACTTGAGTCCTCTCTGTTGAATAGAACTGCAGGGAATTTGCCAGGAATCTATGGAACTAATCTTCACCATCAAATCCGGGGCCTTGTGACCTCTAATGGGACCAATAGTTATCCTGATGTTAAATTGCCAAATGGTGATGGTGTGATTCGTGCGAGTAGCAGTAGTATGTCAGATACTGTTGATGGTAGGGATTCTGGCCATTCCAATGAAGACGAGAGTGGTTTGAGATCAAGGAATGCTGCACTAGCTGCTAATAGTAGCCAAATCGAGGCGGAATGGATTGAACAGTATGAACCTGGCGTCTATATAACACTTGTGGCCTTGCATGATGGAACAAGAGATTTGAAGCGAGTGCGCTTCAGCCGTAGGAGATTTGGGGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGGGACAAGGTATATGAAAAATACAATGTTCGTGGCGCTGACAAGTCTTCCGGCCAAGCAGCACTTAGGGCAGAGGGTGCTGGTTCTCCTGTCACCCAAACTTAG 3360 0.4405 MADLASYGNADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWISSSEERILKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWISGLKALISSGQGGRSKIDGWSDGGLNLDDSRDLTSNSPSESSASASRDISSPDISVSLPNTSPKSFRPDSTLNSERSHAPSDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEIICENLKVGTDKSVTYFSPRADVLLPRSLESNVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGHLGHGVGKNVVQPLLVEALTSTAVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLKVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVDSLSGLRTIAVACGVWHTAAVVEVIATQSSASVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGESIEEIACGAYHVAVLTSKNEVFTWGKGANGRLGHGDLEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEANNNNRRNALPRLSGENKDRLDKSELRLSKSVIPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPLLQLKDVVFSTAVDLRRTVPRPVIAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLRTQVESLIKRCELQELELQRSAKKTQEAMALAADESAKSKAAKEVIKSLTAQLKDLAEKLPPGVYDAENSKPAYLPNGLESNGIHHPDSNGELNSRTESISGSSLASIGLESSLLNRTAGNLPGIYGTNLHHQIRGLVTSNGTNSYPDVKLPNGDGVIRASSSSMSDTVDGRDSGHSNEDESGLRSRNAALAANSSQIEAEWIEQYEPGVYITLVALHDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYEKYNVRGADKSSGQAALRAEGAGSPVTQT. 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03694 1119 MobiDBLite consensus disorder prediction 144 228 - -
Seca10g03694 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Seca10g03694 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 455 IPR000408 -
Seca10g03694 1119 MobiDBLite consensus disorder prediction 981 1024 - -
Seca10g03694 1119 FunFam Putative E3 ubiquitin-protein ligase HERC1 629 697 - -
Seca10g03694 1119 CDD FYVE_like_SF 632 685 - -
Seca10g03694 1119 Pfam FYVE zinc finger 623 689 IPR000306 GO:0046872
Seca10g03694 1119 FunFam Putative E3 ubiquitin-protein ligase HERC1 12 132 - -
Seca10g03694 1119 FunFam PH, RCC1 and FYVE domains-containing protein 1 457 628 - -
Seca10g03694 1119 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 893 - -
Seca10g03694 1119 Coils Coil 822 856 - -
Seca10g03694 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Seca10g03694 1119 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 627 689 IPR017455 -
Seca10g03694 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 296 IPR000408 -
Seca10g03694 1119 Pfam Transcription factor BRX N-terminal domain 873 908 IPR027988 -
Seca10g03694 1119 ProSiteProfiles BRX domain profile. 1039 1094 IPR013591 -
Seca10g03694 1119 MobiDBLite consensus disorder prediction 996 1010 - -
Seca10g03694 1119 Coils Coil 878 898 - -
Seca10g03694 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Seca10g03694 1119 FunFam PH, RCC1 and FYVE domains-containing protein 1 207 456 - -
Seca10g03694 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 696 IPR013083 -
Seca10g03694 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 403 IPR000408 -
Seca10g03694 1119 SUPERFAMILY RCC1/BLIP-II 235 624 IPR009091 -
Seca10g03694 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Seca10g03694 1119 Gene3D - 455 633 IPR009091 -
Seca10g03694 1119 CDD PH_PLC_plant-like 12 124 - -
Seca10g03694 1119 SUPERFAMILY PH domain-like 13 123 - -
Seca10g03694 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 572 619 IPR000408 -
Seca10g03694 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 349 400 IPR000408 -
Seca10g03694 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 466 513 IPR000408 -
Seca10g03694 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 518 567 IPR000408 -
Seca10g03694 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Seca10g03694 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 404 452 IPR000408 -
Seca10g03694 1119 SMART fyve_4 621 690 IPR000306 GO:0046872
Seca10g03694 1119 PRINTS Chromosome condensation regulator RCC1 signature 349 365 IPR000408 -
Seca10g03694 1119 PRINTS Chromosome condensation regulator RCC1 signature 299 315 IPR000408 -
Seca10g03694 1119 PRINTS Chromosome condensation regulator RCC1 signature 508 526 IPR000408 -
Seca10g03694 1119 PRINTS Chromosome condensation regulator RCC1 signature 566 587 IPR000408 -
Seca10g03694 1119 PRINTS Chromosome condensation regulator RCC1 signature 406 420 IPR000408 -
Seca10g03694 1119 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Seca10g03694 1119 MobiDBLite consensus disorder prediction 1099 1119 - -
Seca10g03694 1119 SUPERFAMILY FYVE/PHD zinc finger 623 697 IPR011011 -
Seca10g03694 1119 Gene3D - 13 129 IPR011993 -
Seca10g03694 1119 Gene3D - 186 454 IPR009091 -
Seca10g03694 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 519 570 IPR000408 -
Seca10g03694 1119 MobiDBLite consensus disorder prediction 144 229 - -
Seca10g03694 1119 MobiDBLite consensus disorder prediction 782 815 - -
Seca10g03694 1119 Pfam Transcription factor regulating root and shoot growth via Pin3 1038 1093 IPR013591 -
Seca10g03694 1119 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Seca10g03694 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03694 Seca-Chr10 71522231 71531798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03694 882 1110 Major Intrinsic Protein MIP AT1G31880 31.878 1.84e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03694 - - gmx:100805364 1872.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03694 10 71522231 71531798 Seca10g03694 10 71522231 71531798 PCT