Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03679 ATGGAAAAAGCTGTTGCGAGAAGTGAGGGGTCATGGTCTCGTACTTCAAATTCCCATTCAGCTATAGAAAAACCTTTAACAGCTGAAGCAACATCTGGAGATTGGGAAATAGACAGGAGGTTATTGAAGATAGGAGAAAGAATAGCCTCTGGATCCTGTGGTGATTTGTATCATGGAGTTTATCTTGGTCAAGATGTTGCTGTTAAGGTTATGAGATCTGAGCAATTGAATGATGCTTTAGAGGATGAGTTTGCTCAAGAAGTGGCAATTCTGAGTCAGGTACATCATAAAAATGTTGTACGCTTTATTGGTGCATGTACAAAGTCTCCACATTTGTGCATAGTAACAGAGTATATGCCTGGTGGAAGTCTGTATGATTACTTGCACAAACATCATAACGTCTTGGAGCTGTCTCCATTACTGAAGTTTGCGATTGATGTTAGCAAGGGTATGGAGTATTTGCATAGAAACAACATAATTCACAGGGATTTGAAGACAGCCAATTTGCTGATGGACACACACGGGGTTGTTAAAGTAGCAGATTTTGGAGTTGCCCGATTCCTAAATCAAGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCGCCAGAGTATCTTATTCTTATCGGATTTTCTCACAAGGTTATAAACCATCAGCCGTATGATCAGAAAGCAGATGTGTTCAGCTTTTCCATAGTGCTGTGGGAATTAGTGACATCAAAGGTACCATATGATACTATGACTCCACTACAAGCTGCCTTGGGTGTAAGACAGGGTCTGCGCCCAGAACTTCCAAAGCATGGGCACCCTAAACTAGTAGATTTGATGCAAAGATGTTGGGAAGCAGTTCCAAGCAACCGGCCATCCTTCCATGAGATAACTGTCGAACTTGAGAATCTTATACAAGAAGTTGAGAATGATTCACAACCTAATGGTGCTTGA 951 0.4164 MEKAVARSEGSWSRTSNSHSAIEKPLTAEATSGDWEIDRRLLKIGERIASGSCGDLYHGVYLGQDVAVKVMRSEQLNDALEDEFAQEVAILSQVHHKNVVRFIGACTKSPHLCIVTEYMPGGSLYDYLHKHHNVLELSPLLKFAIDVSKGMEYLHRNNIIHRDLKTANLLMDTHGVVKVADFGVARFLNQGGVMTAETGTYRWMAPEYLILIGFSHKVINHQPYDQKADVFSFSIVLWELVTSKVPYDTMTPLQAALGVRQGLRPELPKHGHPKLVDLMQRCWEAVPSNRPSFHEITVELENLIQEVENDSQPNGA. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03679 316 ProSiteProfiles Protein kinase domain profile. 42 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03679 316 FunFam Serine/threonine-protein kinase isoform 1 32 120 - -
Seca10g03679 316 PRINTS Tyrosine kinase catalytic domain signature 271 293 IPR001245 GO:0004672|GO:0006468
Seca10g03679 316 PRINTS Tyrosine kinase catalytic domain signature 228 250 IPR001245 GO:0004672|GO:0006468
Seca10g03679 316 PRINTS Tyrosine kinase catalytic domain signature 116 129 IPR001245 GO:0004672|GO:0006468
Seca10g03679 316 PRINTS Tyrosine kinase catalytic domain signature 153 171 IPR001245 GO:0004672|GO:0006468
Seca10g03679 316 PIRSF ILK 4 314 - -
Seca10g03679 316 SMART serkin_6 42 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03679 316 Gene3D Phosphorylase Kinase; domain 1 30 119 - -
Seca10g03679 316 MobiDBLite consensus disorder prediction 9 25 - -
Seca10g03679 316 Gene3D Transferase(Phosphotransferase) domain 1 120 314 - -
Seca10g03679 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Seca10g03679 316 Pfam Protein tyrosine and serine/threonine kinase 42 299 IPR001245 GO:0004672|GO:0006468
Seca10g03679 316 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 29 306 - -
Seca10g03679 316 CDD STKc_MAP3K-like 48 300 - -
Seca10g03679 316 SUPERFAMILY Protein kinase-like (PK-like) 21 305 IPR011009 -
Seca10g03679 316 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03679 Seca-Chr10 70816483 70841489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03679 32 312 MAP Kinase Kinase Kinase AT4G35780 59.220 4.22e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca10g03679 PK_Tyr_Ser-Thr 2.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03679 - - gmx:100797987 549.28