Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03641 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGAAGCTCTGGAGATGCAGCAGTGGCAGCTGCTGCTGCATCAGCAGCAGGAGGAGGAGGAGCTCATGACGGCGGTGACACGGCGGCGGGTGGCGGAGGATCAAATTCAGGGGATGATGAAAGGGGAAGAGGAGAAGAAGGTGACCGGAGCTTTGGTGGGAACAGGTGGCCAAGACAAGAGACTCTCGCTTTGTTGAAGATACGGTCAGATATGGGCATAGCCTTTCGAGATGCCAGTATTAAGGGTCCCTTATGGGAAGAAGTCTCAAGGAAGATGGCAGAGCTTGGCTATCACAGAAACGCCAAGAAATGCAAAGAGAAATTTGAGAATGTTTACAAGTACCACAAGAGAACCAAAGAAGGAAGAAGTGGGAAATCAGATGGTAAAACTTATCGTTTTTTTGATCAATTAGAAGCACTTGAAAACAACCCTGCAATTCAATCCCCAACACCTTTAAAACCACTACCTGCAACACCAGTATCAGTAGTAGTAACATCTGCATCATTGCCATCACTTCCAACCACAGCAGCTACTACTATTAGTACCACAACAACAGTGCCAGTGCCAGTGCCAGTGCCATTACCACCATTGTCCAACACCAATAATATTCCCCCCACCACCACCACCACTGTTCCCTCACATTCCACCACTGTTCCATCAACAACAACAACACTTCCCATATCCATACCTCAAGTCCAAGGCATTCTCAACACTCCATCAATTAACCTCACAATCCCTTCCTTCCAACCACAACCACCATCATCAAACCCTACATATTTCCCAAACCCTACAACCATCCCTCCTTACACCATCACCCCACCTTCTTTCCCAACAGATCTATTGTCCAATTCAAGTTCTTCCTCAACTTCCTCAGAGGAAACAACCACAATGGAAGGGGGAAGGAGGAAGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGACTAATGAAGGAGGTGATGGAGAAACAAGAGGAGCTGCAGAAGAGATTCTTGGAAGCCATAGAGAAAAGAGAAAGAGAGAGAGTTGCTAGAGAAGAAGCATGGAGAGTGCAAGAGATGCAAAGGATAAATAGGGAAAGAGAAATTCTAGCACAAGAAAGATCAATAGCTGCAGCAAAAGATGCAGCTGTTATGGCATTTTTGCAAAAGATAGCTGAACAACAAAATCTTGGTACACCATTGAACAACATCAATAATATTCCACAACCAGTGCCACAAGAAACCACACCTACACCTACACCTACACCAACACCGCCACAATTGCAAACTCCAACACCAACAATAGCAACACCAACACCAACACCACCAGTTCCTCTGGCCCCACCATTAGCCCCACAACAACAACATCAGGTGCAGGTGCAGCAACAACAGCAAGTGACCAATATGGAAATAATAAAAAGTGATAATGGGGAGAGTGTGATGACAGCTAGCTCTTCAAGGTGGCCAAAAGTTGAGGTTCAAGCATTGATAAACTTGAGAACAAGCCTTGAAACAAAGTACCAAGATAGTGGACCAAAAGGACCACTATGGGAGGAGATTTCAGCCTTGATGAAGAAAATGGGGTACAACAGGAATGCCAAAAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGAAGAGACCAGAAGATTCAAAGACTTGTCCTTATTTCCACCAATTGGATGCTCTATACAGGGAAAGGACCAACAAGATGGAGAAGCCAGATGGCACCATGATGGCGCCGTTGATGGTGCGGCCGGAGCAGCAGTGGCCTCCGCAGCAGACAACCGTGCCGGATGTGACCATGGAAGACGCCGGCAATGACCCGCGACAACACCGCGAGGAGGAAGAGTATGATGATGATAATGATGATGATGATAAGGATGTTGGTGGTGAAGAAGATGATGAAGATGAAGATGAGAATGGAGGTGAGAATTTTGAGATTGTGGCAAGTAAACCAGCTTCAGTGGATGCTTCTGCTGAGTGA 2034 0.4626 MLGDSAVLGTGGGGSSGDAAVAAAAASAAGGGGAHDGGDTAAGGGGSNSGDDERGRGEEGDRSFGGNRWPRQETLALLKIRSDMGIAFRDASIKGPLWEEVSRKMAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSDGKTYRFFDQLEALENNPAIQSPTPLKPLPATPVSVVVTSASLPSLPTTAATTISTTTTVPVPVPVPLPPLSNTNNIPPTTTTTVPSHSTTVPSTTTTLPISIPQVQGILNTPSINLTIPSFQPQPPSSNPTYFPNPTTIPPYTITPPSFPTDLLSNSSSSSTSSEETTTMEGGRRKRKRKWKDFFERLMKEVMEKQEELQKRFLEAIEKRERERVAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMAFLQKIAEQQNLGTPLNNINNIPQPVPQETTPTPTPTPTPPQLQTPTPTIATPTPTPPVPLAPPLAPQQQHQVQVQQQQQVTNMEIIKSDNGESVMTASSSRWPKVEVQALINLRTSLETKYQDSGPKGPLWEEISALMKKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRERTNKMEKPDGTMMAPLMVRPEQQWPPQQTTVPDVTMEDAGNDPRQHREEEEYDDDNDDDDKDVGGEEDDEDEDENGGENFEIVASKPASVDASAE. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03641 677 ProSiteProfiles Myb-like domain profile. 67 125 IPR001005 -
Seca10g03641 677 MobiDBLite consensus disorder prediction 51 66 - -
Seca10g03641 677 FunFam Trihelix transcription factor GT-2 69 130 - -
Seca10g03641 677 MobiDBLite consensus disorder prediction 288 308 - -
Seca10g03641 677 MobiDBLite consensus disorder prediction 288 318 - -
Seca10g03641 677 MobiDBLite consensus disorder prediction 633 660 - -
Seca10g03641 677 MobiDBLite consensus disorder prediction 601 677 - -
Seca10g03641 677 MobiDBLite consensus disorder prediction 209 237 - -
Seca10g03641 677 SMART sant 65 127 IPR001005 -
Seca10g03641 677 SMART sant 490 552 IPR001005 -
Seca10g03641 677 MobiDBLite consensus disorder prediction 413 440 - -
Seca10g03641 677 Gene3D - 494 555 - -
Seca10g03641 677 Gene3D - 69 130 - -
Seca10g03641 677 Pfam Myb/SANT-like DNA-binding domain 492 579 IPR044822 -
Seca10g03641 677 Pfam Myb/SANT-like DNA-binding domain 67 153 IPR044822 -
Seca10g03641 677 Coils Coil 322 353 - -
Seca10g03641 677 MobiDBLite consensus disorder prediction 1 68 - -
Seca10g03641 677 ProSiteProfiles Myb-like domain profile. 492 550 IPR001005 -
Seca10g03641 677 MobiDBLite consensus disorder prediction 418 440 - -
Seca10g03641 677 CDD GT1 492 557 - -
Seca10g03641 677 MobiDBLite consensus disorder prediction 214 237 - -
Seca10g03641 677 FunFam Trihelix transcription factor GT-2 494 555 - -
Seca10g03641 677 CDD GT1 67 132 - -
Seca10g03641 677 PANTHER FI21293P1 34 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03641 Seca-Chr10 69550432 69553462 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03641 65 612 Trihelix Transcription Factor Family AT1G76890 45.664 1.31e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca10g03641 Myb_DNA-bind_4 2.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03641 - - lang:109354958 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03641 10 69550432 69553462 Seca10g03641 10 69550432 69553462 ECH
Seca10g03641 10 69550432 69553462 Seca10g03641 10 69550432 69553462 PCT