Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03638 ATGCAGCTGGGATACTCAAGTGTGGTGGAGATCTCCTCCCCTAATAAGCCCGTGATGGCGGTGACGGTGGCGGCACGGGCGGCGGCAGCAGGTTCACATGAAGGTGTCAACGGTGGAGACATGATTGGTATGGATGTAGATGCAAATTCAGGTGAAGAAAAAGGTAAGGAAGAAGAAGGAAGAGATGAAGGTGATAACAATAAGATCAGTTTTGTAGGAAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCAGATATGGATGCAGTGTTTCGAGATTCAACTCTGAAAGGTCCACTTTGGGAAGAAGTTTCAAGGAAACTAGCAGAACTTGGATATCACCGAAGCGCAAAGAAGTGCAAGGAAAAATTTGAGAACGTTTACAAGTACAATAAGAGAACCAAGGAAAACAGAAGTGGCAAATCACATGGGAAAACCTATAGATTCTTTGATCAATTACAAGCTCTTGAGAATCAACTCACTGTCTCTAATTACCCACCAAATTCACAACCTGATTTGGCAACAAAAAACACATTGCCACCAAAACCGAATATTGAAACCACAACCACTTTTCCATCCTCAAACCCTACACTCATTTCTCCTTCACCACCAACCAATGTCAACAATATTGATGTCTCACATTCCTTGCCCAACAACATGAACGTTTTCTCAACCGCTTCAACTTCTTCTTCAACCGCTTCCGATGAAGACTTAGAAGGGAGACATAGGAAGAAGAGGAAGTTTTGGAAGGATTACTTTAGGAGGCTCACTAGGCAGGTTTTGTATAAACAAGAGGAAATGCAAATGAAGTTCTTGGAAGCTATTGAGAAACGAGAGAGGGAATGGGTGGCACAACAAGATTGTTGGAGGATGCAAGAAATGGCGAGGATTAATAAGGAACATGAGATACTCATTCAAGAACGATCAACAGCTGCGGCTAAAGATGTTGCTGTTATTGCGATGTTGCAAAAGTTGTGTGGCAATGAGAATCCTACACAACCTGAAGGTGGCAATTCCCTTCCCCAACAACCACCACAACCTACAGTATCACAAGTAGAACCACAACAACAGGAGCAACCACCACATCCACAACCACCACCACTAACATTGGTGCCAAGCAACAATTTTGAAATCAAGAGAATGAACATTAATGGTGGCAGTGCTACAAGTCCAATAGTAAGCTCTTCTTCTTCTAGGTGGCCTAAGGCAGAAGTTCATGCTCTGATAAGGCTGAGGACAAGTCTTGAACCCAACTTTCATGAAAATGGACCAAAAGCTCCACTATGGGAGGAGCTATCAGCTGGAATGCAGAGGCTTGGCTACAACCGAAATGCAAAGAGATGCAAAGAGAAATGGGAGAACATCAATAAGTACTTCAAGAAAATGAGGGAAAGTAACAAACAAAGACGTGAGGATAGTAAGACTTGTCCTTATTATCATGAGCTTGAAGCTCTATACAAAGAAAAAGGCAAAATCCAGAACCCCTTTGGCATTGCATTGCATACTTTGAAACCGAATGAGATGATGGAGCCATTGATGGTGCAACCGGAACAGCAATGGAGGCCTCCACCTCAATATGAACAGCAGACATTGGAAGAGAGGGAGATTAATGAAAAAGAAGATGAAGAAGAAGAATATGATGATGATGGTGTTGAAGAAGATGGTGAATCAGGAGATAATATTGTGGAAGATGAAACAACAAGCTAG 1719 0.4276 MQLGYSSVVEISSPNKPVMAVTVAARAAAAGSHEGVNGGDMIGMDVDANSGEEKGKEEEGRDEGDNNKISFVGNRWPRQETLALLKIRSDMDAVFRDSTLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYNKRTKENRSGKSHGKTYRFFDQLQALENQLTVSNYPPNSQPDLATKNTLPPKPNIETTTTFPSSNPTLISPSPPTNVNNIDVSHSLPNNMNVFSTASTSSSTASDEDLEGRHRKKRKFWKDYFRRLTRQVLYKQEEMQMKFLEAIEKREREWVAQQDCWRMQEMARINKEHEILIQERSTAAAKDVAVIAMLQKLCGNENPTQPEGGNSLPQQPPQPTVSQVEPQQQEQPPHPQPPPLTLVPSNNFEIKRMNINGGSATSPIVSSSSSRWPKAEVHALIRLRTSLEPNFHENGPKAPLWEELSAGMQRLGYNRNAKRCKEKWENINKYFKKMRESNKQRREDSKTCPYYHELEALYKEKGKIQNPFGIALHTLKPNEMMEPLMVQPEQQWRPPPQYEQQTLEEREINEKEDEEEEYDDDGVEEDGESGDNIVEDETTS. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03638 572 ProSiteProfiles Myb-like domain profile. 74 132 IPR001005 -
Seca10g03638 572 MobiDBLite consensus disorder prediction 332 376 - -
Seca10g03638 572 MobiDBLite consensus disorder prediction 332 361 - -
Seca10g03638 572 SMART sant 72 134 IPR001005 -
Seca10g03638 572 SMART sant 400 462 IPR001005 -
Seca10g03638 572 PANTHER FI21293P1 48 543 - -
Seca10g03638 572 MobiDBLite consensus disorder prediction 36 71 - -
Seca10g03638 572 MobiDBLite consensus disorder prediction 519 572 - -
Seca10g03638 572 Pfam Myb/SANT-like DNA-binding domain 402 489 IPR044822 -
Seca10g03638 572 Pfam Myb/SANT-like DNA-binding domain 74 160 IPR044822 -
Seca10g03638 572 FunFam Trihelix transcription factor GT-2 404 465 - -
Seca10g03638 572 MobiDBLite consensus disorder prediction 47 68 - -
Seca10g03638 572 CDD GT1 403 467 - -
Seca10g03638 572 Gene3D - 404 465 - -
Seca10g03638 572 Gene3D - 76 137 - -
Seca10g03638 572 CDD GT1 74 139 - -
Seca10g03638 572 MobiDBLite consensus disorder prediction 540 572 - -
Seca10g03638 572 MobiDBLite consensus disorder prediction 166 245 - -
Seca10g03638 572 ProSiteProfiles Myb-like domain profile. 402 460 IPR001005 -
Seca10g03638 572 FunFam Trihelix transcription factor GT-2 76 137 - -
Seca10g03638 572 MobiDBLite consensus disorder prediction 166 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03638 Seca-Chr10 69219913 69223046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03638 58 524 Trihelix Transcription Factor Family AT1G76880 47.723 6.67e-136 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca10g03638 Myb_DNA-bind_4 2.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03638 - - gmx:100776819 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03638 10 69219913 69223046 Seca10g03638 10 69219913 69223046 PCT