Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03631 CTTTATATAATTTTCAGTATTCTGTTATTGTTCCTTATATATCCATCTGTTTTTGCTGGCCTCTTGGGCTCTTACCAGTTACCACTACAGCAATTACAGCTGCAGCAACTAATTAACATGGCAAAACAAGCAGATCTATCTTCACCTTCCTTCATTTGTGATTGGACTTACGATGTGTTTCTCAATTTTAGAGGTGAAGACACTCGGAACAACTTCACTGGCAATCTTTACAACTCTCTGCATCAAAGGGGAATCCACACCTTCATTGATGATCAAAAGCTTAGAAGAGGGGAAGAAATCAAGCCAACTCTCATCAAAGCCATTCAAGAATCTAGGACTGCCATCATGGTTTTCTCTGAAAACTATGCTGACTCAACCTATTGCTTGGATGAACTTGTCACAATCCTTGACCACTTAAAAGCACAAGGGCGATTTGTTTGGCCAATCTTTTATGATGTTGATCCGTCAGATGTTAGACATCAAACGGGGAGCTATGCAAATGCTTTGGCAAAACTTGAAGAAAGGTTTCAAGATGACAAGGGAAAGGTGAAAAAATGGAGAGAGGCTTTATATGAGGCAGCTAACCTGTCTGGTTGGCATTTCTTCAAACAAGGGTCTCTACCTGAATATAAATTTATTAAAAGAATTGTTGATGAGGTTTCCAGAAAGCTCAATCACACTCCATTGCATGTTTCTGATAACCCGGTTGGGCTAGAGTTTCGAGTGTTGCAAGTGAAATCTCTTCTTCAACTTGGATCTAGTGAGGGTGTCATCATGGTAGGGATTTATGGGGTTGGTGGAATAGGTAAATCAACAATTGCACGTGCTGTGTGTAACTTGATTGCAAATCAATTTGATGGCTTTTGTTTTCTTGCTGACATTAGAGAAAAAGCAATTAATAGTCATGGCCTTACACAACTCCAAGAAACGCTACTATCTAAAATACTTGGAGAGAAAGATATTAAAATTGAAGATGTCAATGAAGGAATTCCACTCATAAAATGGAGGCTCCAACGAAAGAAGGTTCTTTTGATTCTTGATAATGTGGACAACCTGGACCAATTAAAGGCAATTGCTGGAGGATGTGATTGGTTTGGCTCAGGAAGCAGGATCATTATGACATCTAGAGACAAGCATTTGCTAGCTACTCATGGAGTCACAAAATTTTATGAGGTTCAAGAATTAAACAAAAAGCAGGCTCTTGAATTGTTAAGTTGGAATGCCTTCAAAAGTAACAAAGTCGATCCAAGTTATGTAAACATTTCAAACCGTGTCCTATCTTATGCTGGTGGCCTACCTTTGGCATTGGAAGTAATAGGTTCTTTTTTGTATAGTAAAGGAATTGATGAATGGAACTCTTTGTTAGATCAATATGAATGTGTTCCTAATAGCAGGGTTGATAAAATACTTAAAGTAAGTTATGATGGATTGGAGGAAAACGAGAAAAACGTTTTCCTTGACCTTGCTTGTTTCTTCAACAATTCCCATGTATCAGGTGCCAAACGTATTCTACATGTTCGTGGTTTGCATCCAGAAATTGGTATTCAGATTTTGGTTGACAGGTCTCTTATAAAGATTGATGATTCTGATTATGTGAGAATGCATGATTTGATTCGAGACATGGGTAGAGAAATTGTTAGACAGGAATCAAAATCAGAGCCCGGTGAACGAAGTAGGTTGTGGTTTGATGAGGACATCATACACGTATTGCAAGAAGATACATGGTTTGACCCTTTGAGTTTTATGTATTTTGGAAGCTGTAGATTCTTAAGGAAACTACCTGACCTTTCTGGACTCCCAAATTTAAGGGTATTGTGTGTTGACTACTGCAGTAATTTAATTGAAATCCATGATTCAATTGGATTTCTTCCTAAACTCATTTTGTTTAGTGCTCAAGTGTGCATCAATCTCCATACTTTTGGACGTGCCATCTGGTTGCCATCTCTTGAGACTCTTGATCTAAGTTGGTGCACGAGTCTTAAGAGTTTTCCTAAAGTAGTAGGAAAGATGGAAAATATTCGACATGTTTATTTGGACGGTACTATCTTACTACAAGAATTGCCATTTTCAATCAAAAATCTCATTGGACTTGAACGAGTGTACATGCGTCGATGCAAAAATCTCAAGCTTCCAAGTAGCATAGGATCATTGCCTAAACTTACCACGATATATTTGGATAGGGGATATGTATTAGTTGTACCGAATGAAGTAAGAGAAAAAGTCTTTATTTACTTTTAG 2238 0.378 LYIIFSILLLFLIYPSVFAGLLGSYQLPLQQLQLQQLINMAKQADLSSPSFICDWTYDVFLNFRGEDTRNNFTGNLYNSLHQRGIHTFIDDQKLRRGEEIKPTLIKAIQESRTAIMVFSENYADSTYCLDELVTILDHLKAQGRFVWPIFYDVDPSDVRHQTGSYANALAKLEERFQDDKGKVKKWREALYEAANLSGWHFFKQGSLPEYKFIKRIVDEVSRKLNHTPLHVSDNPVGLEFRVLQVKSLLQLGSSEGVIMVGIYGVGGIGKSTIARAVCNLIANQFDGFCFLADIREKAINSHGLTQLQETLLSKILGEKDIKIEDVNEGIPLIKWRLQRKKVLLILDNVDNLDQLKAIAGGCDWFGSGSRIIMTSRDKHLLATHGVTKFYEVQELNKKQALELLSWNAFKSNKVDPSYVNISNRVLSYAGGLPLALEVIGSFLYSKGIDEWNSLLDQYECVPNSRVDKILKVSYDGLEENEKNVFLDLACFFNNSHVSGAKRILHVRGLHPEIGIQILVDRSLIKIDDSDYVRMHDLIRDMGREIVRQESKSEPGERSRLWFDEDIIHVLQEDTWFDPLSFMYFGSCRFLRKLPDLSGLPNLRVLCVDYCSNLIEIHDSIGFLPKLILFSAQVCINLHTFGRAIWLPSLETLDLSWCTSLKSFPKVVGKMENIRHVYLDGTILLQELPFSIKNLIGLERVYMRRCKNLKLPSSIGSLPKLTTIYLDRGYVLVVPNEVREKVFIYF. 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03631 745 Gene3D - 394 473 IPR042197 -
Seca10g03631 745 SUPERFAMILY Toll/Interleukin receptor TIR domain 47 199 IPR035897 -
Seca10g03631 745 Gene3D - 222 388 IPR027417 -
Seca10g03631 745 SMART till_3 56 196 IPR000157 GO:0007165
Seca10g03631 745 Gene3D - 474 545 IPR036388 -
Seca10g03631 745 PRINTS Disease resistance protein signature 336 350 - -
Seca10g03631 745 PRINTS Disease resistance protein signature 259 274 - -
Seca10g03631 745 PRINTS Disease resistance protein signature 429 443 - -
Seca10g03631 745 PRINTS Disease resistance protein signature 644 660 - -
Seca10g03631 745 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 713 IPR044974 GO:0006952
Seca10g03631 745 Gene3D - 53 221 IPR035897 -
Seca10g03631 745 FunFam Disease resistance protein (TIR-NBS-LRR class) 53 226 - -
Seca10g03631 745 Pfam NB-ARC domain 245 473 IPR002182 GO:0043531
Seca10g03631 745 ProSiteProfiles TIR domain profile. 55 224 IPR000157 GO:0007165
Seca10g03631 745 Pfam TIR domain 57 230 IPR000157 GO:0007165
Seca10g03631 745 SUPERFAMILY L domain-like 533 727 - -
Seca10g03631 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 488 IPR027417 -
Seca10g03631 745 Coils Coil 169 189 - -
Seca10g03631 745 Gene3D Ribonuclease Inhibitor 576 730 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03631 Seca-Chr10 68337134 68340251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03631 590 725 WRKY Transcription Factor Family AT4G12020 37.226 1.59e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03631 - - gmx:100802408 733.021