Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03622 ATGCTAGCTCATATGTTTGGGACGGATTCCCATTACCTGGTTTATGAGTTCATGAAGAATGGAAGTTTGCAAGATATGTTTTACAAAGTTAAAAGGGGTGAAACGGAGTTGGATTGGTCAGCAACGCAAAAGATTGCATTTGAGTTTGATCCCCACCCTTCTGACTCAAAGGCTCCCAAGTCAAGCAAAAGAGAACTAGCTGGGTGGTTTTTTGGTCCCTTGATTAAGAAAGTCGAGGACTTGGTGTTCTTGGAGAAGCAAGATGGATTGGCTTCTTTGCAAATCGTTGGAAGAGGTGGGTGTGTGGAGGTTTACAAGGCTATATTACCTAGAACGAAATGGGTTGGCTTTCGCGCTACAATTTATAGTTCCTTGATTAAGAAAGTCGAGGACTTGGCGTTCTTAGAGAAGCAAGATGGATTGGCTTCTTTGCAAATCATTGGAAGAGGTGGGTGTATGGAAGTTTACAAGGCTAGATTACCTAGAAAGTTTGATCTCCATCCTTCAGATTCAAAGGCTCCCAAGTCAAACAAAAGAGAACTAGGTGGGTGGTTTTTTGGTCCCTTGATTAAGAAAGTCGAGGACTTGGCGTTCTTGGAGAAGCAAGATGGATTGGCTTATTTGCAAATCGTTGGAAGAGGTGGGTGTGTGGAGGTTTACAAGGCTAGATTACCTAGAAATTCCCATTACCTACTTTATGAGTTCATGAAGAATGGAAGTTTGCAAGATATGCTGGAAAAAGTTAAAAGGGGTGAAGTGGAGTTGGATTGGTCAGAAACGCAAAAGATTGCACTTGAGCTTGATCCCCACCCTTCAGGGTCAAAGGCTCCCAAGTCAAGCAAAAGAGAACTAGGTGGGTGGTTTTTTGGGTTTGTGGTTGGTGCAATAAAAGTCGATGACTTGGCGTTCATGGAGAAGCAAGATGGATTGGCTTCTTTGCAAATCGTTGGAAGATGTGGGGTTTGTCAAATTCGACACCGAATCCTTGTGCCTATGCTAGCTTATATGTTTGAGACGGATTCCCATTACCTGGTTTATGAGTTCATGAAGAATGGAAGTTTGCAAGATATGTTGGAAAAAGTTAAAATGGGTGAAGCAGAGTTGGATTTGTCAGCAACGCAAAAGATTACATGTGAGTTTGATCTCCATCCTTCAGAGTCAAAGGATCCCAAGTTAAAGAAAAGAGAACTAGGTGGGGTGGTTTTTTGGAAAGTCGAGGACTTGGCGTTCTTGGAGAAGCAAGATGGATTGGCTTATTTGCAAATCGTTGGAAGAGGTGGGTGTGTGGAGGTTTACAAGGCTAGATTACCTAGAAATTCCCATTACCTACTTTATGAGTTCATGAAGAATGGAAGTTTGCAAGATATGCTGGAAAAAGTTAAAAGGGGTGAAGTGGAGTTGGATTGGTCAGAAACGCAAAAGATTGCACTTGGTATAGCTGTTGGCCTTGAATATCTTCACACGAAACGTAGTCCAAAAAAAATTCATAGAGACCTCAAGCTTGCAAATATTCTTCTAGATGATTAA 1527 0.4185 MLAHMFGTDSHYLVYEFMKNGSLQDMFYKVKRGETELDWSATQKIAFEFDPHPSDSKAPKSSKRELAGWFFGPLIKKVEDLVFLEKQDGLASLQIVGRGGCVEVYKAILPRTKWVGFRATIYSSLIKKVEDLAFLEKQDGLASLQIIGRGGCMEVYKARLPRKFDLHPSDSKAPKSNKRELGGWFFGPLIKKVEDLAFLEKQDGLAYLQIVGRGGCVEVYKARLPRNSHYLLYEFMKNGSLQDMLEKVKRGEVELDWSETQKIALELDPHPSGSKAPKSSKRELGGWFFGFVVGAIKVDDLAFMEKQDGLASLQIVGRCGVCQIRHRILVPMLAYMFETDSHYLVYEFMKNGSLQDMLEKVKMGEAELDLSATQKITCEFDLHPSESKDPKLKKRELGGVVFWKVEDLAFLEKQDGLAYLQIVGRGGCVEVYKARLPRNSHYLLYEFMKNGSLQDMLEKVKRGEVELDWSETQKIALGIAVGLEYLHTKRSPKKIHRDLKLANILLDD. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03622 508 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 441 508 - -
Seca10g03622 508 Pfam Protein kinase domain 429 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03622 508 Gene3D Transferase(Phosphotransferase) domain 1 291 380 - -
Seca10g03622 508 ProSiteProfiles Protein kinase domain profile. 205 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03622 508 SUPERFAMILY Protein kinase-like (PK-like) 140 267 IPR011009 -
Seca10g03622 508 SUPERFAMILY Protein kinase-like (PK-like) 322 362 IPR011009 -
Seca10g03622 508 Gene3D Transferase(Phosphotransferase) domain 1 123 267 - -
Seca10g03622 508 Gene3D Transferase(Phosphotransferase) domain 1 404 508 - -
Seca10g03622 508 SUPERFAMILY Protein kinase-like (PK-like) 415 508 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03622 Seca-Chr10 68064258 68070707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03622 284 508 Receptor kinase-like Gene Family AT2G31880 30.534 1.44e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Seca10g03622 Pkinase 2.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03622 - - psom:113299458 121.709