Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03598 ATGACCTTGCTAACGGTGGCGCACCAAAGAGGTTCAGGGGAGTTCATCAGATTCACGGCGCAGCATGGCCGCGGGGATGGTGATGGTGGTAGTTCTGAGGCATCACAGTCACTTGGATTCAACCAACAAGGTGAGGTGACAATGCAGAGTTCTTCTATGGTTTCAGGGTATAGCAGGGCTAGAGAGTTAACAGAAATGGTTTCAGCTCTTACTCATGTGGCATCATCAGGAAGTAGTAGCACTGAATGGGTACAAGGAAGTGGTTTTCCTGTGATGTCTGGTGGATTAGGACATGGATCTTTATCTTTATCTTCTTCTGATAGCCTTGTTTTGCCATCTGGCTCTCTTTCTGGTTCATGGATTGGCCACAAAAGAGGGCGTGAAGAAAGTTCTTCTCATCAGTTGTTACAACAACAAGCTGTTCCTAGACTCTTCAGAACTGTTGGTGATATCATTGTACCTTCTCAAGGAGAGTCATCTTCAGTGACAGAAGAATCTTCCACCACCACCACCACAGCCGCTGCTGCCGCCATAGCGGCGGCTGAAGGAGGTGGAGAGAGGAGGAGGAGGTACAGGGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCTGAAATCAGAGATCCACATAAAGCAGCAAGAGTTTGGCTTGGGACATTTGACACGGCAGAAGCTGCAGCAAGAGCTTATGATGAAGCTGCATTGAGGTTCAGGGGAAGCAGAGCAAAGCTCAATTTCCCTGAAAATGTTAGAGCAGTGCCACCACAAGTTCAACCTTTTCCAGCCACAAGGGTGACCAATTCTGAAACCTCAGCAACTCAATTCCTCCCTCTCCGGCCACCGCCACTGCAACAACCACCGTTGATGCCTCAACAGCAGCTACCATTTCAGGGTCCCTCTGACTTGATCAGAGACTACTTGGAATATTCTCAACTTCTGCAGAGTTCTGGTGACTTTCAATATCAACATCAACAACAGCAGCAACAACCTTCTAGTTTGCTTCAGCAGTGGTACTATAATTCACAATTGGCTGCACTTCAATCACCTTCTTTGTTATCATCAACACCCTCTTTGTCTTCTTCTATATCAACACCACCACCAACAACAGCAGCATCGTTTTCTCAACTTTCCTCTGCTTCATTTCCCCTGTTTTCTAGCCAACAAATGGGTCTTTTCCGGCAGCCGGAAAACCGCCCTCGTGGCGGCGGTGGGTCAGAGTTTCCGCCGTCAACATGGTCAGATACCAGTGGCCATCCACCACCTTATGGTTGA 1272 0.4843 MTLLTVAHQRGSGEFIRFTAQHGRGDGDGGSSEASQSLGFNQQGEVTMQSSSMVSGYSRARELTEMVSALTHVASSGSSSTEWVQGSGFPVMSGGLGHGSLSLSSSDSLVLPSGSLSGSWIGHKRGREESSSHQLLQQQAVPRLFRTVGDIIVPSQGESSSVTEESSTTTTTAAAAAIAAAEGGGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGSRAKLNFPENVRAVPPQVQPFPATRVTNSETSATQFLPLRPPPLQQPPLMPQQQLPFQGPSDLIRDYLEYSQLLQSSGDFQYQHQQQQQQPSSLLQQWYYNSQLAALQSPSLLSSTPSLSSSISTPPPTTAASFSQLSSASFPLFSSQQMGLFRQPENRPRGGGGSEFPPSTWSDTSGHPPPYG. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03598 423 MobiDBLite consensus disorder prediction 387 423 - -
Seca10g03598 423 SUPERFAMILY DNA-binding domain 190 248 IPR016177 GO:0003677
Seca10g03598 423 SMART rav1_2 190 253 IPR001471 GO:0003700|GO:0006355
Seca10g03598 423 PRINTS Ethylene responsive element binding protein signature 213 229 IPR001471 GO:0003700|GO:0006355
Seca10g03598 423 PRINTS Ethylene responsive element binding protein signature 191 202 IPR001471 GO:0003700|GO:0006355
Seca10g03598 423 Gene3D AP2/ERF domain 189 249 IPR036955 GO:0003700|GO:0006355
Seca10g03598 423 MobiDBLite consensus disorder prediction 354 374 - -
Seca10g03598 423 FunFam Ethylene-responsive transcription factor 2 189 248 - -
Seca10g03598 423 MobiDBLite consensus disorder prediction 260 278 - -
Seca10g03598 423 PANTHER DNA-BINDING DOMAIN 143 329 IPR044808 GO:0003700|GO:0009873
Seca10g03598 423 ProSiteProfiles AP2/ERF domain profile. 190 247 IPR001471 GO:0003700|GO:0006355
Seca10g03598 423 MobiDBLite consensus disorder prediction 254 296 - -
Seca10g03598 423 Pfam AP2 domain 190 239 IPR001471 GO:0003700|GO:0006355
Seca10g03598 423 CDD AP2 198 249 IPR001471 GO:0003700|GO:0006355
Seca10g03598 423 MobiDBLite consensus disorder prediction 279 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03598 Seca-Chr10 67512391 67514152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03598 175 263 AP2-EREBP Transcription Factor Family AT2G33710 67.416 1.82e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca10g03598 AP2 8.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03598 - - gmx:100804843 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03598 10 67512391 67514152 Seca10g03598 10 67512391 67514152 ECH
Seca10g05023 10 115671969 115673984 Seca10g03598 10 67512391 67514152 PCT
Seca10g03598 10 67512391 67514152 Seca10g03598 10 67512391 67514152 PCT