Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03583 ATGAGTCGAGGAGGTGCAGCTGGTCCCAAGGGGAAGAAGAAGGGTGTGACATTCACCATTGACTGCGCGAAGCCAGTGGAGGACAAGATCATGGACATTGCATCTCTCGAGAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGCAAGGCCGGTGCTCTCGGCGATACTGTCACTGTTACACGCGAGAAGACCAAGATCATTGTCACTTCTGACAGCAACTTCTCCAAACGGGTATCTGAAGTACTTGACAAAGAAGTACTTGAAGAAACACAATGTACGGGACTGGCTCAGAGTGATTGCTTCTAA 306 0.4902 MSRGGAAGPKGKKKGVTFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTREKTKIIVTSDSNFSKRVSEVLDKEVLEETQCTGLAQSDCF. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03583 101 PANTHER 60S RIBOSOMAL PROTEIN L22 3 91 IPR002671 GO:0003735|GO:0005840|GO:0006412
Seca10g03583 101 FunFam 60S ribosomal protein L22-2 5 94 - -
Seca10g03583 101 Gene3D - 6 97 IPR038526 -
Seca10g03583 101 Pfam Ribosomal L22e protein family 14 90 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03583 Seca-Chr10 67062136 67064159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03583 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 83.117 8.00e-42 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03583 K02891 - jre:109012705 145.206