Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca10g03571 | ATGGCCATAACACCTTTAGGTAGCACGTCTGCTGCACAATGGGGAATTCGTCCTCAGCTATTACTGAGGTCCAGTATGACAGGCAAGATTGCATCATCCAGCCACAATGTTACAAGCAGGGTAGGCTTTATGGTTGCCCCAAGTTCAAGCTTTTTGTCTCGGGATTCTTTGCATACACTATTTAACACCAGTTTGTCTCAAACTTTGCATCACCGCAAGGGGTCAAGGTTGATTGTTAGAGCAGATTCAGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGCAATTACCATCCTGATGTGAACAAAGAACCTGGAGCAGAAACAAAATTTAAGGAGATCAGCAATGCATATGAGGTCTTATCAGATGATGAGAAACGATCCATATATGACAGATATGGAGAGGCTGGGCTTAAAGGTTCTGGAATTGGCATGGGGGATTTCAGCAATCCTTTTGATCTGTTTGAGTCCTTGTTTGAGGGGATGAATCGTGGTTCTCCTAGAGGTTCTTGGAATGGAGCAATTGATGGCGAAGATGAATATTACAGTCTTCTTTTGAACTTCAAAGAAGCAGTTTTTGGTGTAGAAAAAGAGATAGAGATTAGCCGATTAGAGATCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCAAGATGTAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCATCAACAAGAACTCCATTAGGCATCTTCCAGCAGTCAATGACGTGCTCTTCATGCAATGGGACTGGGGAAATTTCAACACCTTGCAGTACATGTTCTGGGGATGGTCGAGTGAGGAAATCGAAGCGGATTAGTCTTAAGGTCCCAGCTGGTGTGGACTCTGGTAGTCGATTAAGGGTCCGAAATGAAGGGAATGCTGGAAGGCGAGGGGGTGCTCCCGGAGATCTCTTTGTTGTTATTGAGGTTATCCCAGATCCTGTCCTTAGAAGAGATGACACTAACATTTTATACACCTGCAAGGTTTCTTACATTGATGCAATCTTGGGGACTACAATTAAGGTTCCTACAGTAGATGGAATGGTGGATTTGAAAATTCCAGCAGGGACCCAACCCAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCACTGCTGAATAAAAACAATATGAGAGGAGATCAATTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTAAGCAGTGATGAGAAAAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACTGGTCGGAGATGA | 1317 | 0.4374 | MAITPLGSTSAAQWGIRPQLLLRSSMTGKIASSSHNVTSRVGFMVAPSSSFLSRDSLHTLFNTSLSQTLHHRKGSRLIVRADSDYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEPGAETKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGIGMGDFSNPFDLFESLFEGMNRGSPRGSWNGAIDGEDEYYSLLLNFKEAVFGVEKEIEISRLEICGTCNGSGAKPGTTPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCSTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNAGRRGGAPGDLFVVIEVIPDPVLRRDDTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPLLNKNNMRGDQLVRVQVEIPKRLSSDEKKLIEELADLSKGKTATGRR. | 439 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca10g03571 | 438 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 189 | 344 | IPR008971 | GO:0006457|GO:0051082 | |
| Seca10g03571 | 438 | CDD | DnaJ | 84 | 137 | IPR001623 | - | |
| Seca10g03571 | 438 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 336 | 422 | IPR008971 | GO:0006457|GO:0051082 | |
| Seca10g03571 | 438 | FunFam | Molecular chaperone DnaJ | 213 | 289 | - | - | |
| Seca10g03571 | 438 | CDD | DnaJ_C | 192 | 414 | - | - | |
| Seca10g03571 | 438 | SUPERFAMILY | Chaperone J-domain | 81 | 177 | IPR036869 | - | |
| Seca10g03571 | 438 | ProSiteProfiles | Zinc finger CR-type profile. | 208 | 289 | IPR001305 | GO:0031072|GO:0051082 | |
| Seca10g03571 | 438 | SUPERFAMILY | DnaJ/Hsp40 cysteine-rich domain | 208 | 288 | IPR036410 | - | |
| Seca10g03571 | 438 | Gene3D | - | 191 | 326 | - | - | |
| Seca10g03571 | 438 | Pfam | DnaJ domain | 84 | 145 | IPR001623 | - | |
| Seca10g03571 | 438 | NCBIfam | molecular chaperone DnaJ | 84 | 427 | IPR012724 | GO:0005524|GO:0006457|GO:0009408|GO:0051082 | |
| Seca10g03571 | 438 | CDD | DnaJ_zf | 221 | 284 | IPR001305 | GO:0031072|GO:0051082 | |
| Seca10g03571 | 438 | Pfam | DnaJ central domain | 221 | 284 | IPR001305 | GO:0031072|GO:0051082 | |
| Seca10g03571 | 438 | Hamap | Chaperone protein DnaJ [dnaJ]. | 81 | 434 | IPR012724 | GO:0005524|GO:0006457|GO:0009408|GO:0051082 | |
| Seca10g03571 | 438 | FunFam | Putative Mitochondrial DnaJ chaperone | 277 | 326 | - | - | |
| Seca10g03571 | 438 | Gene3D | - | 331 | 437 | - | - | |
| Seca10g03571 | 438 | SMART | dnaj_3 | 83 | 140 | IPR001623 | - | |
| Seca10g03571 | 438 | Gene3D | DnaJ domain | 81 | 183 | IPR036869 | - | |
| Seca10g03571 | 438 | PANTHER | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED | 46 | 434 | - | - | |
| Seca10g03571 | 438 | PRINTS | DnaJ domain signature | 104 | 119 | IPR001623 | - | |
| Seca10g03571 | 438 | PRINTS | DnaJ domain signature | 86 | 104 | IPR001623 | - | |
| Seca10g03571 | 438 | PRINTS | DnaJ domain signature | 120 | 140 | IPR001623 | - | |
| Seca10g03571 | 438 | PRINTS | DnaJ domain signature | 140 | 159 | IPR001623 | - | |
| Seca10g03571 | 438 | FunFam | Chaperone protein dnaJ A6 chloroplastic | 81 | 184 | - | - | |
| Seca10g03571 | 438 | ProSiteProfiles | dnaJ domain profile. | 84 | 148 | IPR001623 | - | |
| Seca10g03571 | 438 | FunFam | Chaperone protein dnaJ 1, mitochondrial | 331 | 438 | - | - | |
| Seca10g03571 | 438 | ProSitePatterns | Nt-dnaJ domain signature. | 125 | 144 | IPR018253 | - | |
| Seca10g03571 | 438 | Pfam | DnaJ C terminal domain | 196 | 411 | IPR002939 | - | |
| Seca10g03571 | 438 | Gene3D | - | 221 | 284 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca10g03571 | Seca-Chr10 | 66758801 | 66765322 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca10g03571 | 85 | 147 | C2H2 Transcription Factor Family | AT1G74250 | 43.478 | 2.32e-09 | 57.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca10g03571 | K03686 | - | gmx:100811006 | 783.867 |