LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g03565	ATGAATGAGTCATCAATTCCAATAGTCAAAGGTGTAGAGAAATGGGTCAAAAATATTCATGAAAATATTGTTCAACGTGACCAAGAGAGTGTTGTTGACTATACACCATACTTGGAAATGAAGTTTGAATCTGAGGTAGCGGCCTATGAATTTTATAATGAGTACGGTAGAAGAATTGGATTTGGTATTCATCGAGAATATGGAAATAAAAGCAAAAAAGATGGAATTCTAACTTCAAGAAGGTTCTCATGCTTCAAAGAGGGTAAACGGAGCGTTGACAAACGAGACCACTTGACAAAAGAGCCTAGAGCAGAAACTAGAACAGGATGTGACGCGCGTATGGTTATTTCACTTGATCGAAAGATCGGGAAATACAAGGTTATTAACTTTGTAGCTCAACATAATCATCCTCTTCAACCGTCAGAATGTATTCATATGATTCGCTCTCATCGGCACATATCTGAGTCACAAGCATCACAAATTGTATTAGCAGATGAATCTGGATTGAAACCAAAAGATTTTCATGAATATGTGTCCAAGCAAGTTGGTGGAATAGACAGTGTTGGCTATACAAGACAAGACCATAAGAATTACCTCCGAACTAGAAGAAAATTGTCTTTAAGGTATGGTGAAGTGGGTGCATTATTGATGTACTTCAAACGACAAAGTGAAAATCCTTCATTCTTTTATGAATTTCAAATGGATGTTGAAGAGCAAATAACGAATATATTTTGGGCAGATGCACAGATGATAAATGATTATGGGTACTTTGATGATATCATCACTTTTGATACCACTTACAAAACAAATAAGGATTATCGACCTCTGGGAGTATTTCTTGGGCTTAATAATCATAGGCAAACAATTGTTTTTGGGGCAACATTGTTATATGATGAAACAATACCTTCTTTTCAATGGTTATTTGAAACTTTTTTGAAAGCAATGGGCGGAGAAAAGCCTAAAACCATTCTAACAGATCAAGATGCAGCAATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTATGTACTTGGCATATAAGAGAAAATGCCCTTAGGCATGTGAACCATCTATATCAAAAGAGTTCACAATTCTGCTCAGGTTTTGAAGCATGCATTGATCTACACGAGGAAGAAGGTGAATTCCCGACTACATGGAATGATTTACTTGTTGACCATAGTGTTTCCGATGATTCGTGGCTACATACAATTTTTCGAGTGAAGGAAAAATGGGCATGGGCTTATGTCCGAAAAACTTTCACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAAAATCATTTGAAGTCAGATTTAAATTTGGTACAATTTTTCACACACATGGAAAGAGTTGTCAATGGAAAACGGTACAATATGTCAGAAGCTGATTATGAGTCAAGACATAAGCTGCCTAGATTGAAAATGAAGAAGGCCCCTATGCTTGTACAAGCTGGAAATATTTACACTCCAAAAATATTTGAGGAATTCCAAGAGGAATATGAGGAATATCAAGGCACTTGCATAAAAGAAATGAAAGAAGGGTTGTACATTGTTACAAATTATGATAACAGTAAGGAGCGAATAGTATTGGGGAATGTTGTGGATCAAAAGGTTGCTTGTGATTGTCGTAAATTTGAGACTCATGGTATCTTATGA	1686	0.3606	MNESSIPIVKGVEKWVKNIHENIVQRDQESVVDYTPYLEMKFESEVAAYEFYNEYGRRIGFGIHREYGNKSKKDGILTSRRFSCFKEGKRSVDKRDHLTKEPRAETRTGCDARMVISLDRKIGKYKVINFVAQHNHPLQPSECIHMIRSHRHISESQASQIVLADESGLKPKDFHEYVSKQVGGIDSVGYTRQDHKNYLRTRRKLSLRYGEVGALLMYFKRQSENPSFFYEFQMDVEEQITNIFWADAQMINDYGYFDDIITFDTTYKTNKDYRPLGVFLGLNNHRQTIVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMPETFHGLCTWHIRENALRHVNHLYQKSSQFCSGFEACIDLHEEEGEFPTTWNDLLVDHSVSDDSWLHTIFRVKEKWAWAYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHMERVVNGKRYNMSEADYESRHKLPRLKMKKAPMLVQAGNIYTPKIFEEFQEEYEEYQGTCIKEMKEGLYIVTNYDNSKERIVLGNVVDQKVACDCRKFETHGIL.	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g03565	561	ProSiteProfiles	WRKY domain profile.	65	139	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g03565	561	Pfam	MULE transposase domain	260	354	IPR018289	-
	Seca10g03565	561	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	22	561	IPR031052	GO:0006355
	Seca10g03565	561	Pfam	FAR1 DNA-binding domain	50	140	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g03565	Seca-Chr10	66454845	66456639	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca10g03565		MULE	1.6e-26	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g03565	-		-	tpra:123895462	903.664