Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03559 ATGAATGTGTCTTCAACTCCAATAGCTGAAAGTGCAGAGGAATTGGTTAAAAATATCCATGAAAATATTATGCAACAAGGTCAAGAGAGTGTTGTTGGCCACACACCACACATGGGAATGGAGTTTGAATCTGAGGTAGCAGCCTATGATTTTTACAATGAATATAGCAAGAGAACTTGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGAAAAAAAGATGGAATTCTCACTTCAAGAAGATTTTCATGCTTTAAAGAGGGTAAACGAGGCACTGACAAACGAGACCACTTGACAAAAGACCCAAGAGCAGAAACCAGAACAGGATGTGAAGCACGTATGGTTATTTCACTTGATCGAAAGATTGGGAAATACAAGGTTTATGACTTTGTAGCTCAACATAATCACCCTCTTCAACCACATGAATGTGTTCATATGATTCGCTCTCATCGACGCATATCTGAATCACAAGCATCACAAATTGTATTGGCTGATGAATCTGGACTAAAACCAAAATATTTTCATGAATATATATCCAAGCAAGTTGGTGGAATAGACACTCTTGGTTATACAAGAAAAGACCATAAGAATTACCTTCGAACTAGAATGAAGGAGTCATTAAGGTATGGTGAAGTGGGTGCATTGTTGATGTATTTCAAACGACAGAGTGAAAATCCTTCATTCTTTTATGACTTTCAAATGGATGTTGAAGAGAAAATAACAAATATATTTTGGGCAGATGCACAGATGATAAATGATTATGGCTACTTTGGTGATGTCATCACTTTTGACACCACATACAAGACTAATAAGGATTATCGACCGTTAGGAGTATTTCTTGGGCTTAATAATCACAGGCAAACGGTTGTTTTTGGGGCAACATTGCTTTATGATGAAACAATCCCTTCTTTTCAATGGCTATTTGAAACTTTTCTCAAAGCAATAGGTGGAGAAAAGCCTAAAACCATTCTAACAGATCAAGATGCAGCAATGGCCAAGGCTATTTCTTTAGAAGAGGAAGGTGAGTTTCTGAAGGCATGGAATACTTTACTTGTTGAGCATAATGTTTCTGAGGATTCATGGTTACATACGATTTTTCGAGTGAAGGAAAAATGGGCATGGGCTTATGTTCGAAAAACTTTCACTTTAGGTATGAGATCAACTCAATTAAGTGAGAGCTTCAATTCTGATTTGAAAAACCATTTGAAGTCAGATTTGAATTTGGAATTCCAAGAGGAATATGAGGAATATCAAGGCACATGCATAAAGGAATTGAAAGAAGGGACGTATGTTGTTACAAATTATAATGACAACAAAGAGCGAATAGTAATGGGGCATCTAGTGGATCAAAAGGTTGCTTGTGATTGTCGTAAATTTGAGACTCATGGTATCTTATGCAGTCATGCTTTGAAAGTTTTGGATGTGATGAATATTAAGCTACTTCCTCAACACTATATATTAAAGCGGTGGACAAGAGATGCAAGGTTGGGAAGAAATCGAGATTGGAAAGGACAACACATTGAATTGGACATAAAAGCACATTTCATGAAGCGACACAATGAGTTGTGTTCTCGAATGGTTGATTTGACAAACAAAGCATCTGAATCTCATCAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAATAAAATAATTGATGATATGTTGGCTAAAAACTGCACCCATGAAGTGTCAAGTGGAATGTGTCATGTATCCATATCACTTTCAAATGGAACAACTGACAACAATGTGGACACTATTGATTTTGGCGGAGCAAAAGGTATAAAGAAGCGAGATTCCTCATATAAGGGAAAGAAACGACCTAAATCTTGGGTTGAGAAATTGGCTAGAAAAAGAAAGGGAAATTTATCACAGAAAAAGAGAAAGACTCAAGAAAATTTGGAACAATCTGGGGAACCAATTGATGGTGTGGATACTTTTAATACAAGCCATACTTTTACTCAATTGTTAACGCGACCACTGGACTACAATTCAATTTCCCTATCTCTACATCATGTTGTTATGAATGAAAGCCAATGTGAGAGTGGAAGCCAAGTTTTGAATGCAAGTCAATATATGCATTTAAATGAAGCTGGTACTGGAAGCCAAAATAGGACTACAATCTAA 2133 0.3638 MNVSSTPIAESAEELVKNIHENIMQQGQESVVGHTPHMGMEFESEVAAYDFYNEYSKRTWFGIRREYGNKRKKDGILTSRRFSCFKEGKRGTDKRDHLTKDPRAETRTGCEARMVISLDRKIGKYKVYDFVAQHNHPLQPHECVHMIRSHRRISESQASQIVLADESGLKPKYFHEYISKQVGGIDTLGYTRKDHKNYLRTRMKESLRYGEVGALLMYFKRQSENPSFFYDFQMDVEEKITNIFWADAQMINDYGYFGDVITFDTTYKTNKDYRPLGVFLGLNNHRQTVVFGATLLYDETIPSFQWLFETFLKAIGGEKPKTILTDQDAAMAKAISLEEEGEFLKAWNTLLVEHNVSEDSWLHTIFRVKEKWAWAYVRKTFTLGMRSTQLSESFNSDLKNHLKSDLNLEFQEEYEEYQGTCIKELKEGTYVVTNYNDNKERIVMGHLVDQKVACDCRKFETHGILCSHALKVLDVMNIKLLPQHYILKRWTRDARLGRNRDWKGQHIELDIKAHFMKRHNELCSRMVDLTNKASESHQTYTFLSKVYEESNKIIDDMLAKNCTHEVSSGMCHVSISLSNGTTDNNVDTIDFGGAKGIKKRDSSYKGKKRPKSWVEKLARKRKGNLSQKKRKTQENLEQSGEPIDGVDTFNTSHTFTQLLTRPLDYNSISLSLHHVVMNESQCESGSQVLNASQYMHLNEAGTGSQNRTTI. 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03559 710 Pfam FAR1 DNA-binding domain 50 140 IPR004330 -
Seca10g03559 710 ProSiteProfiles Zinc finger SWIM-type profile. 430 477 IPR007527 GO:0008270
Seca10g03559 710 Pfam SWIM zinc finger 451 474 IPR007527 GO:0008270
Seca10g03559 710 ProSiteProfiles WRKY domain profile. 65 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca10g03559 710 SMART 26again6 452 479 IPR006564 GO:0008270
Seca10g03559 710 Pfam MULE transposase domain 260 336 IPR018289 -
Seca10g03559 710 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 552 IPR031052 GO:0006355
Seca10g03559 710 MobiDBLite consensus disorder prediction 621 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03559 Seca-Chr10 66058744 66061462 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g03559 FAR1 1.9e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03559 - - tpra:123895462 926.391