Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03556 ATGCTTTCTACGCTTCCTCTCTTACAACCTTCTCCTTTCTCACCTCTTTCCTTTGACATCTCTGAACACATTTTTAGAGAAACCAAGAAATCTATAGCCATATATCTCTCCATCCATACATCCCCAATGGATTTCTCTCTGATTATGAATTCCCTAAACACTACTACTGCAATTGGCCTTCTCTCCATAATTTTCCTTTGCTTCTTATTTCTAATTCACCGCTCAAAAGCCTCCAAAGGCAGAGAACCTCCCATGGTTGCAGGTTCCTGGCCTCTACTCGGTCACCTTCCGCTTTTAAGCGGTTCTCAAGCAACCCATCATATTTTGGGTTCCATGGCTGACAAATATGGTCCCCTTTTCACCATCAAGCTTGGTAGCGCTCCAACTTTGGTCATCAACAACTGGGAAATTGCCAAGGAATGCTACACCACCAATGACATGGCTGTGTCCTATCGCCCTAACCTCATTGCTGGTGAACACATGACATACAACCAAGCCATGCTTGGTTTCGCACCCTATGGTCCTTATTGGCGTGAAATGCGCAAGATTGTGACTCTAGGGTTCCTCTCCAATCACCGAATTGATTTGCTAAGCCACATTCGAGTCTCAGAGGTGGAGACTTCGATTAAAGAGCTTTTCAATGCTTGGTCACGTGGAAAGGACGGTTCTGATTTTTTGTTGGTGGAGTTGAAGCAGTGGTTCCATGAGTTGGCATTCAACACGGCTCTTAGAATGGTTGCTGGGAAGAGGTATTTTGGGGAAACTGCTGTGGTTAGCAAGGAAGAAGCACAAAAGTGTTTGAAAGCTTTGAGGGAGTTTATGCGTTTGATGGGGGTGTTTACTGTTGCAGATGCTGTTCCTTTTTTGAGGTGGTTTGATTTTGGGGGACATGAGAAGGCCATGAAAGAAAATGTTAAGGAGTTAGATGGCGTTGTGACCGAGTGGTTAAGAGAGCACCGGGAGAAGAGGGCTTTAGCTAGTGAGAAGGTTAAAGGAGGAGGTGATGAAGATTTCATGGATGTCATGCTTTCTACTATTGATGGAACAATGATTTATGGGTTCGACTCAGACACCATCAACAAAGCTACAACACTGGCATTAGTTCTGGGAGCAACTGACACTAGTAGTGTTACTCATACCTGGGCAATGTGTTTGCTACTGAATAATCCTCATACATTGGAGAAAGTAAAGGAAGAGATCGATGTCCATATTGGAAAAGAGAGATTATGCATAACTGAGTCAGATATAAACAAGTTGGTATACCTTCAAGCTGTTGTTAAAGAGACACTGAGGTTGTATCCAGCATCTCCCCTATCAGGTGCTCGTGAATTCAGAGAAGATTGTATGCTGGGTGGCTACCATGTGAAGAAGGGAACTCGACTAATCACAAACTTGTGGAAGATCCAAACAGACCCTAGCATGTGGCCAGACCCAATAGAATTTAAGCCAGAGAGGTTCCTTACTACCCATAAGGAAATTGATGTTAAGGGTCAACATTTTGAGTTTTTACCTTTCGGAAGTGGAAGAAGGATATGTCCTGGAATATCCTTTGGCCTTCGCACAGCTTATTTGACTTTGGCAAATTTTCTGCACTCCTTTGAAGTCTCAAAAGTATCAAGTGAACCCATCGATATGTCTGCAGTCGTAGAAATAACCAACATCAAAGTTACTCCTCTTGAAGTTCTCATCAAACCTCGTTTGTCTCTTAATCATTATGAAACCATGTGA 1728 0.4311 MLSTLPLLQPSPFSPLSFDISEHIFRETKKSIAIYLSIHTSPMDFSLIMNSLNTTTAIGLLSIIFLCFLFLIHRSKASKGREPPMVAGSWPLLGHLPLLSGSQATHHILGSMADKYGPLFTIKLGSAPTLVINNWEIAKECYTTNDMAVSYRPNLIAGEHMTYNQAMLGFAPYGPYWREMRKIVTLGFLSNHRIDLLSHIRVSEVETSIKELFNAWSRGKDGSDFLLVELKQWFHELAFNTALRMVAGKRYFGETAVVSKEEAQKCLKALREFMRLMGVFTVADAVPFLRWFDFGGHEKAMKENVKELDGVVTEWLREHREKRALASEKVKGGGDEDFMDVMLSTIDGTMIYGFDSDTINKATTLALVLGATDTSSVTHTWAMCLLLNNPHTLEKVKEEIDVHIGKERLCITESDINKLVYLQAVVKETLRLYPASPLSGAREFREDCMLGGYHVKKGTRLITNLWKIQTDPSMWPDPIEFKPERFLTTHKEIDVKGQHFEFLPFGSGRRICPGISFGLRTAYLTLANFLHSFEVSKVSSEPIDMSAVVEITNIKVTPLEVLIKPRLSLNHYETM. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03556 575 CDD CYP82 117 566 - -
Seca10g03556 575 Pfam Cytochrome P450 89 545 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 FunFam Cytochrome P450 82C4 73 564 - -
Seca10g03556 575 PANTHER CYTOCHROME P450 82C3-RELATED 60 572 - -
Seca10g03556 575 SUPERFAMILY Cytochrome P450 88 566 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 PRINTS E-class P450 group I signature 512 535 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 PRINTS E-class P450 group I signature 464 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 PRINTS E-class P450 group I signature 113 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 PRINTS E-class P450 group I signature 502 512 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 PRINTS E-class P450 group I signature 379 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 PRINTS E-class P450 group I signature 423 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 PRINTS P450 superfamily signature 370 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 PRINTS P450 superfamily signature 503 512 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 PRINTS P450 superfamily signature 424 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g03556 575 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 505 514 IPR017972 GO:0005506|GO:0016705
Seca10g03556 575 Gene3D Cytochrome P450 69 561 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03556 Seca-Chr10 65970853 65973417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03556 60 572 Cytochrome P450 AT4G31970 47.784 2.72e-176 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03556 - - gmx:100802193 756.903