Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03539 ATGGAAGCTGCAAAAGGCCTTTGCTATCTACATCATGAATGTTCATCACTGATTGTCCATCGAGATGTAAAATCAAACAACATCCTTCTTGATGCCCCTAATGGCCTAATTAATTAA 117 0.3761 MEAAKGLCYLHHECSSLIVHRDVKSNNILLDAPNGLIN. 39
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03539 38 Gene3D Transferase(Phosphotransferase) domain 1 1 37 - -
Seca10g03539 38 ProSitePatterns Serine/Threonine protein kinases active-site signature. 18 30 IPR008271 GO:0004672|GO:0006468
Seca10g03539 38 SUPERFAMILY Protein kinase-like (PK-like) 2 33 IPR011009 -
Seca10g03539 38 ProSiteProfiles Protein kinase domain profile. 1 38 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03539 38 PANTHER LEUCINE RICH REPEAT KINASE 2 3 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03539 Seca-Chr10 65239918 65240034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03539 1 32 Receptor kinase-like Gene Family AT5G65700 87.500 2.36e-15 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca10g03539 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03539 - K00924 oeu:111382819 65.4698