LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g03537	ATGCTCCTCAAAGGATCGTTCTTTCTGAGCCTAAAACCCCAAAACATAGTTAAGCGCTGCCACATCCCAAGAAGAAGTCCATCAATGGCGGGAGCTACAGGAAGAACCCTCTTCTCCCTCTCTCCTTCCTTCACTACACGCCTCTCTCATCATGCCACGCGCCTCCCATTATTTCTCACTCGCTCGAAGCCCATTACCGTTTTGCCACGGTTCAGGCCTCTCTGTTCCATCACCGCCACACCAGAAACCATGGACCCGGAGCAGATGAAGCACTCCATGCTCCTCGAGAAGCTCAGGATGAGACACCTCAAGGACAGTGCCAAAACCCCAGAAGCCAAGAATCCCCCAAAGAAGGGTCCTGCTGTTGCTGCTGAGAATGAGAGTACTGAGATGGGGAAGAAATCTGAGGGGAAGAAGAAGGTGGTGGAGGTTGGGAGTTTTGAGGAGTTGGGAATCAGTGATGAGGTTATGGGGGCTGTTAGGGAAATGGGTATTGAAGTTCCCACTGAGATACAGTGTATTGGTGTCCCTGCTATGTTGGAAGGGAAGAGTGTGGTTTTAGGGTCTCATACTGGGTCTGGAAAGACTCTGGCTTACTTGCTTCCCCTTGTTCAGTTGCTAAGACGGGATGAACAATTGAATGGAATGCTGATGAAGCCCAGGCGTCCCCGAGCTGTTGTGTTATGCCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCAATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGTCGTCTTAGGCCTCAGGAGGATTCACTTAATAACCCCATAGATATGGTAGTTGGTACTCCTGGCAGGATTCTTCAACATATAGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGGGGCTTTGGTCCTGACATACACAAATTTCTAGGCCCATTAAAACGTCGTACTTCAAAATCTGATGGCCTAGGTTTTCAGACTATCCTGGTCACAGCAACCATGACAAAGGCTGTGCAATTGCTGATTGATGAGGAGTTTCAAGGAATTGTACATCTGCGCACATCAACGTTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAACTCTCGGGTTCTGAGAACAAGATGGAAGCATTACTTCAGGTACTAGAGCCAAGCCTGGCAAAAGGGAACAGGGTGATGGTTTTCTGCAATACATTGGATTCGAGCCGTGCTGTGGATCACTTTCTTGGTGAAAACCAGATTTCTACTGTGAACTACCATGGGGAGGTACCGGCAGAACAAAGGGTTGAAAACCTCAACAAGTTTAAGAGTGACAGTGAAGATTGTCCTACATTGGTTTGCACGGACTTAGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCTTTGAATTCTATCGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACAAGTTTGGTTGCTAAAAAGGACTTGATCTTGGCCAACAAAATAGAGGAGGCAGTAAGAAAGAACGAGAGTTTGGAGGCTATCACTAAAGAAAGTGTCCGAAAGGACATTGTCAGGACCCAAATCACTGAGCAGAGGGGAAGGAGCAAAACATTGGTTAAAGTTTCAAAAGCTAAGCACAAATCTGGTGGCCGCACCAATGCTGGGAATACTGGATCAGGTATGAAATCTGGTAAAGGATCACCACCAGCAAAATCTATGAAGAAAGGGATTAATGTTTCAAAATCTGTAAAATCTTCCAGTTCAACTAGCTTGAGAAAAGCTTCTTCAGAGAATAAGCAAAAAAGAAAAAGGACCACTGCCAACAATTCTACAAATTCTAAACTCAGTGTTGTGGGGTTTAGGGGGCGAAATTCTTCATCTAGTAAGAAGCAATCTCTTTCGTGA	1959	0.4558	MLLKGSFFLSLKPQNIVKRCHIPRRSPSMAGATGRTLFSLSPSFTTRLSHHATRLPLFLTRSKPITVLPRFRPLCSITATPETMDPEQMKHSMLLEKLRMRHLKDSAKTPEAKNPPKKGPAVAAENESTEMGKKSEGKKKVVEVGSFEELGISDEVMGAVREMGIEVPTEIQCIGVPAMLEGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGMLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGPLKRRTSKSDGLGFQTILVTATMTKAVQLLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKMEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLNKFKSDSEDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLILANKIEEAVRKNESLEAITKESVRKDIVRTQITEQRGRSKTLVKVSKAKHKSGGRTNAGNTGSGMKSGKGSPPAKSMKKGINVSKSVKSSSSTSLRKASSENKQKRKRTTANNSTNSKLSVVGFRGRNSSSSKKQSLS.	653

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g03537	652	MobiDBLite	consensus disorder prediction	596	612	-	-
	Seca10g03537	652	CDD	SF2_C_DEAD	376	508	-	-
	Seca10g03537	652	MobiDBLite	consensus disorder prediction	550	652	-	-
	Seca10g03537	652	MobiDBLite	consensus disorder prediction	567	581	-	-
	Seca10g03537	652	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	388	541	IPR001650	-
	Seca10g03537	652	Pfam	Helicase conserved C-terminal domain	388	499	IPR001650	-
	Seca10g03537	652	Gene3D	-	373	634	IPR027417	-
	Seca10g03537	652	SMART	ultradead3	164	383	IPR014001	-
	Seca10g03537	652	CDD	DEADc	156	355	-	-
	Seca10g03537	652	MobiDBLite	consensus disorder prediction	623	652	-	-
	Seca10g03537	652	MobiDBLite	consensus disorder prediction	105	137	-	-
	Seca10g03537	652	Pfam	DEAD/DEAH box helicase	169	350	IPR011545	GO:0003676\|GO:0005524
	Seca10g03537	652	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	177	511	IPR027417	-
	Seca10g03537	652	Gene3D	-	113	364	IPR027417	-
	Seca10g03537	652	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	176	363	IPR014001	-
	Seca10g03537	652	SMART	helicmild6	417	499	IPR001650	-
	Seca10g03537	652	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	145	173	IPR014014	GO:0003724
	Seca10g03537	652	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	87	535	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g03537	Seca-Chr10	65045862	65053530	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g03537	144	521	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.052	2.58e-42	156

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g03537	-		-	gmx:100805709	892.108