Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03536 ATGTTACTGGCATTGCAGTGCTTCAATGCTGCAGGGTATGTCATCCATAATGCAGATTTGAAGTCTGCAAAGAATTGTGCTTCAGCAGACAACAAGCAGTCAAATTCCTCAATTGGCCTCATGATTGGAACTCCTTGTGAGATTCTTCAATACATTGAAGAGGGGATTGTTGTTCCTGCTGAATTAAGATACTTGGTATTGGATGATGCGGATTGCATGCTTTGTAGTGGCCTTAGTCCTGAAATCCATAAAATTCTCAGACCCTTACAAGATCATGATTCAAAATCTACTGTCAAAAGGTTGCAAACTATTTTGGCAATTTCAACAATATCTGAGGTTTTGGGTGAAGAATCCCCTCTTGTAAAGCATCTTCAGCATGATCATGCAGGAAATGTTTCTGCAATGTCTTTAGAAATGGAGCAAACAGAAGTCTTTCTTTTCACTGAGTCTCTGGATGCTCTTAGGAAAAAAGTGGTGGAGGCCATGGATTCCCTTTTGAAATAA 504 0.3968 MLLALQCFNAAGYVIHNADLKSAKNCASADNKQSNSSIGLMIGTPCEILQYIEEGIVVPAELRYLVLDDADCMLCSGLSPEIHKILRPLQDHDSKSTVKRLQTILAISTISEVLGEESPLVKHLQHDHAGNVSAMSLEMEQTEVFLFTESLDALRKKVVEAMDSLLK. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03536 167 SMART poly_2 106 167 IPR002004 GO:0003723
Seca10g03536 167 Pfam Poly-adenylate binding protein, unique domain 119 163 IPR002004 GO:0003723
Seca10g03536 167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 111 IPR027417 -
Seca10g03536 167 Gene3D - 117 167 - -
Seca10g03536 167 SUPERFAMILY PABC (PABP) domain 112 163 IPR036053 GO:0003723
Seca10g03536 167 Gene3D - 2 116 IPR027417 -
Seca10g03536 167 Pfam DEAD/DEAH box helicase 3 107 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03536 Seca-Chr10 65043438 65044694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03536 100 165 Eukaryotic Initiation Factors Gene Family AT2G23350 45.714 3.57e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03536 - - aprc:113851459 276.559