Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03527 ATGGCGACGATAATCTCTGCACCAAAAATTACGATTCCGGCACATGCAGCATTTAGCAGCATTCGATTCGAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAATGAGACACACTTGTATGATCTCTTCAGCCAAGTGGCTCAGGTGGTTTCCGCTAGGGTTTGCAGGGATCACACGATGCGATCCTCTCTCGGTTACGCTTATGTGAATTTTGCCAATGCTCAAGATGCGGCTAATGCCATGGAACATCTGAACTTCACTCCTCTGAATGGGAAACCAATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATTAAGAACCTTGAAAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAACTGTGCTTTCCTGTAAGGTGGCTGTGGATATCAGTGGCCAATCAAAAGGATATGGTTTTGTGCAATTTGACAATGAAAAGTCTGCACAGGATTCCATCCAACAGTTAAATGGTATGCTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTGATGAGGACCTTAAGGAGCTCTTTGGAACCCATGGTACAATCACTAGTGTTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCAGCTGCTGTAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAGGGCTCAAAGCAAAGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAATTGCAAGCTGCTAATTTGTACTTGAAAAACCTTGCTGATAACATTAAAGATGCAAATTTGAAGGAGCTATTTTCTGAGTTTGGAACAATCACATCTTGCAAGGTGATGGTCGATTCAAATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTGTATGTCAACAACACTTTTCTTCAAGAAAGCTATGTTTGTTTCAGTTGAATGAAATGAATGGAAAAATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGCAAAGAAGTGAGGAAGGCTTTTCTGCAGGTAATGCCCTTTCAGTTTTCTCAATTCCAAGCACCAAATGGAATCCCATCTTTCCATGCAGGATATCCTGGATATCCATGGGCAACAAGACTTGCTCCTCAACAGCTATATTATGATGAAGGCACACCAAGTTACATGACAACTCAACCAACAGGATATGGCTTCCAGCAACAATTGTATCCAGGTATGCACTCTGTTGCTCCAAATATCACTATGCCATATCATCATCAGAGGCAGGGTCATCCTAGGCAAAGGATGGGCTATCGTAGAGGTGGAAACCGCCACCACAACCAGGTAATTAAGCATCCTTTAGATTTAAACTTTACTTTCATTTTATATAAACAACATTACTAA 1572 0.4033 MATIISAPKITIPAHAAFSSIRFENVSLYVGDLEGNVNETHLYDLFSQVAQVVSARVCRDHTMRSSLGYAYVNFANAQDAANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLEKSIDNKALHDTFAAFGTVLSCKVAVDISGQSKGYGFVQFDNEKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFSETFTDEDLKELFGTHGTITSVVVMKDVNGKSRCFGFVNFESPDSAAAVVERLNGTTTNDEKVLFVGRAQSKAELKAKYEQEKIKRYEKLQAANLYLKNLADNIKDANLKELFSEFGTITSCKVMVDSNGHSKGSGFVAFSTPEEASKAVCQQHFSSRKLCLFQLNEMNGKMIQGKPLYVAVAQRKEVRKAFLQVMPFQFSQFQAPNGIPSFHAGYPGYPWATRLAPQQLYYDEGTPSYMTTQPTGYGFQQQLYPGMHSVAPNITMPYHHQRQGHPRQRMGYRRGGNRHHNQVIKHPLDLNFTFILYKQHY. 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03527 523 CDD RRM3_I_PABPs 204 284 - -
Seca10g03527 523 Coils Coil 302 322 - -
Seca10g03527 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 397 IPR000504 GO:0003723
Seca10g03527 523 SMART rrm1_1 115 187 IPR000504 GO:0003723
Seca10g03527 523 SMART rrm1_1 306 393 IPR000504 GO:0003723
Seca10g03527 523 SMART rrm1_1 206 279 IPR000504 GO:0003723
Seca10g03527 523 SMART rrm1_1 27 100 IPR000504 GO:0003723
Seca10g03527 523 CDD RRM2_I_PABPs 112 187 IPR045305 -
Seca10g03527 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Seca10g03527 523 FunFam Poly(A) binding protein cytoplasmic 1 like 297 401 - -
Seca10g03527 523 FunFam Polyadenylate-binding protein 19 111 - -
Seca10g03527 523 PANTHER RNA BINDING PROTEIN 27 88 - -
Seca10g03527 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Seca10g03527 523 Gene3D - 190 286 IPR012677 -
Seca10g03527 523 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 501 IPR006515 GO:0003723
Seca10g03527 523 CDD RRM4_I_PABPs 306 397 - -
Seca10g03527 523 Gene3D - 20 114 IPR012677 -
Seca10g03527 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 186 IPR000504 GO:0003723
Seca10g03527 523 FunFam Polyadenylate-binding protein 112 195 - -
Seca10g03527 523 SUPERFAMILY RNA-binding domain, RBD 26 193 IPR035979 GO:0003676
Seca10g03527 523 SUPERFAMILY RNA-binding domain, RBD 303 407 IPR035979 GO:0003676
Seca10g03527 523 Gene3D - 115 188 IPR012677 -
Seca10g03527 523 SUPERFAMILY RNA-binding domain, RBD 197 286 IPR035979 GO:0003676
Seca10g03527 523 SMART rrm2_1 306 376 IPR003954 GO:0003676
Seca10g03527 523 SMART rrm2_1 27 100 IPR003954 GO:0003676
Seca10g03527 523 SMART rrm2_1 206 278 IPR003954 GO:0003676
Seca10g03527 523 SMART rrm2_1 115 187 IPR003954 GO:0003676
Seca10g03527 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 274 IPR000504 GO:0003723
Seca10g03527 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 362 IPR000504 GO:0003723
Seca10g03527 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Seca10g03527 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Seca10g03527 523 Gene3D - 287 406 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03527 Seca-Chr10 64674212 64677103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03527 25 499 Eukaryotic Initiation Factors Gene Family AT1G71770 55.306 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03527 K13126 - gmx:100783163 695.271