Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03526 ATGACGATTCCGACACATGCAACATTTAGCGGCATTCGATTCGAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAATGAGACACACCTGTATGATCTCTTCAGCCAAGTGGCTCAGGTGGTTTCCGCTAGGGTTTGCAGGGATCACACGATGCGATCATCTCTCGGTTACGCTTATGTGAATTTTGCCAATGCTCAAGATGCGGCTAATGCCATGGAACATCTGAACTTCACTCCTCTGAATGGGAAACCAATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATTAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAACTGTGCTTTCCTGTAAGGTGGCTGTGGATATCAGTGGCCAATCAAAAGGATATGGTTTTGTGCAATTTGACAATAAAAAGTCTGCACAGGATTCCATCCAACAGTTAAATGGTATGCTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTGATGAGGACCTTAAGGAGCTCTTTGGCACCCATGGTACAATCACTAGTGCTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCAGCTGCTGTAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAGGGCTCAAAGCAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAACTGCAAGCTGCTAATTTGTACTTGAAAAACCTTGCTGATAACATTAAAGATGCAAATTTGAAGGAGCTGTTTTCTGAGTTTGGAACAATCACATCTTGCAAGGTGATGGTTGATTCAAATGGACATAGCAAGGGCTCTGGTTTTGTTGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTGTATGTCAATATGCATACTTGAACTTTCTATTATGTTTGTTTCAGTTGAATGAAATGAATGGAAAAATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGCAAAGAAGTGAGGAAGGCTTTTCTGCAGGCTCAGTTTTCTCAATTCCAAGCACAAATTGGAATTCCATCATTCCCTGAGTTTTCTCAATTCCAAGCACCAAATGGAATTCCATCTTTCCATGCAGGATATCCTGGATATCCATGGGCAACAGGACTTGCCCCTCAACAACTATATTATGATGAAGGCACACCAAGTTACATGACAACTCAACCAATAGGATATGGCTTTCAGCAACAATTGTATCCAGGTATGCACTCTGTTGATCCAAATATCACTATGCCATATCATCATCAGAGGCAGGGTCATCCTAGGCAAAGGATGGGCTATCGTAGAGGTGGAAACCGCCACCACAACCAGGTAATTAAGCATCCTTTAGATTTAAACTTTACTCTCATTTTATATAAACAACATTACTAA 1593 0.4018 MTIPTHATFSGIRFENVSLYVGDLEGNVNETHLYDLFSQVAQVVSARVCRDHTMRSSLGYAYVNFANAQDAANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHDTFAAFGTVLSCKVAVDISGQSKGYGFVQFDNKKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFSETFTDEDLKELFGTHGTITSAVVMKDVNGKSRCFGFVNFESPDSAAAVVERLNGTTTNDEKVLFVGRAQSKAERNAELKAKYEQEKIKRYEKLQAANLYLKNLADNIKDANLKELFSEFGTITSCKVMVDSNGHSKGSGFVAFSTPEEASKAVCQYAYLNFLLCLFQLNEMNGKMIQGKPLYVAVAQRKEVRKAFLQAQFSQFQAQIGIPSFPEFSQFQAPNGIPSFHAGYPGYPWATGLAPQQLYYDEGTPSYMTTQPIGYGFQQQLYPGMHSVDPNITMPYHHQRQGHPRQRMGYRRGGNRHHNQVIKHPLDLNFTLILYKQHY. 531
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03526 530 Gene3D - 180 280 IPR012677 -
Seca10g03526 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 177 IPR000504 GO:0003723
Seca10g03526 530 CDD RRM2_I_PABPs 103 178 IPR045305 -
Seca10g03526 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 89 IPR000504 GO:0003723
Seca10g03526 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Seca10g03526 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 357 IPR000504 GO:0003723
Seca10g03526 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 265 IPR000504 GO:0003723
Seca10g03526 530 CDD RRM4_I_PABPs 301 392 - -
Seca10g03526 530 SMART rrm1_1 197 270 IPR000504 GO:0003723
Seca10g03526 530 SMART rrm1_1 106 178 IPR000504 GO:0003723
Seca10g03526 530 SMART rrm1_1 18 91 IPR000504 GO:0003723
Seca10g03526 530 SMART rrm1_1 301 388 IPR000504 GO:0003723
Seca10g03526 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 392 IPR000504 GO:0003723
Seca10g03526 530 SMART rrm2_1 197 269 IPR003954 GO:0003676
Seca10g03526 530 SMART rrm2_1 301 371 IPR003954 GO:0003676
Seca10g03526 530 SMART rrm2_1 106 178 IPR003954 GO:0003676
Seca10g03526 530 SMART rrm2_1 18 91 IPR003954 GO:0003676
Seca10g03526 530 FunFam Polyadenylate-binding protein 187 282 - -
Seca10g03526 530 Coils Coil 272 292 - -
Seca10g03526 530 FunFam Polyadenylate-binding protein 10 102 - -
Seca10g03526 530 SUPERFAMILY RNA-binding domain, RBD 298 403 IPR035979 GO:0003676
Seca10g03526 530 FunFam Polyadenylate-binding protein 103 186 - -
Seca10g03526 530 PANTHER RNA BINDING PROTEIN 18 79 - -
Seca10g03526 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Seca10g03526 530 Gene3D - 13 104 IPR012677 -
Seca10g03526 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Seca10g03526 530 Coils Coil 297 317 - -
Seca10g03526 530 SUPERFAMILY RNA-binding domain, RBD 17 184 IPR035979 GO:0003676
Seca10g03526 530 Gene3D - 105 179 IPR012677 -
Seca10g03526 530 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 18 508 IPR006515 GO:0003723
Seca10g03526 530 Gene3D - 281 401 IPR012677 -
Seca10g03526 530 CDD RRM3_I_PABPs 195 275 - -
Seca10g03526 530 SUPERFAMILY RNA-binding domain, RBD 188 280 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca10g03526 Seca-Chr10 64638000 64640873 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03526 16 506 Eukaryotic Initiation Factors Gene Family AT1G71770 54.545 0.0 533
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03526 K13126 - gmx:100783163 692.96