Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca10g03526 | ATGACGATTCCGACACATGCAACATTTAGCGGCATTCGATTCGAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAATGAGACACACCTGTATGATCTCTTCAGCCAAGTGGCTCAGGTGGTTTCCGCTAGGGTTTGCAGGGATCACACGATGCGATCATCTCTCGGTTACGCTTATGTGAATTTTGCCAATGCTCAAGATGCGGCTAATGCCATGGAACATCTGAACTTCACTCCTCTGAATGGGAAACCAATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATTAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAACTGTGCTTTCCTGTAAGGTGGCTGTGGATATCAGTGGCCAATCAAAAGGATATGGTTTTGTGCAATTTGACAATAAAAAGTCTGCACAGGATTCCATCCAACAGTTAAATGGTATGCTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTGATGAGGACCTTAAGGAGCTCTTTGGCACCCATGGTACAATCACTAGTGCTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCAGCTGCTGTAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAGGGCTCAAAGCAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAACTGCAAGCTGCTAATTTGTACTTGAAAAACCTTGCTGATAACATTAAAGATGCAAATTTGAAGGAGCTGTTTTCTGAGTTTGGAACAATCACATCTTGCAAGGTGATGGTTGATTCAAATGGACATAGCAAGGGCTCTGGTTTTGTTGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTGTATGTCAATATGCATACTTGAACTTTCTATTATGTTTGTTTCAGTTGAATGAAATGAATGGAAAAATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGCAAAGAAGTGAGGAAGGCTTTTCTGCAGGCTCAGTTTTCTCAATTCCAAGCACAAATTGGAATTCCATCATTCCCTGAGTTTTCTCAATTCCAAGCACCAAATGGAATTCCATCTTTCCATGCAGGATATCCTGGATATCCATGGGCAACAGGACTTGCCCCTCAACAACTATATTATGATGAAGGCACACCAAGTTACATGACAACTCAACCAATAGGATATGGCTTTCAGCAACAATTGTATCCAGGTATGCACTCTGTTGATCCAAATATCACTATGCCATATCATCATCAGAGGCAGGGTCATCCTAGGCAAAGGATGGGCTATCGTAGAGGTGGAAACCGCCACCACAACCAGGTAATTAAGCATCCTTTAGATTTAAACTTTACTCTCATTTTATATAAACAACATTACTAA | 1593 | 0.4018 | MTIPTHATFSGIRFENVSLYVGDLEGNVNETHLYDLFSQVAQVVSARVCRDHTMRSSLGYAYVNFANAQDAANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHDTFAAFGTVLSCKVAVDISGQSKGYGFVQFDNKKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFSETFTDEDLKELFGTHGTITSAVVMKDVNGKSRCFGFVNFESPDSAAAVVERLNGTTTNDEKVLFVGRAQSKAERNAELKAKYEQEKIKRYEKLQAANLYLKNLADNIKDANLKELFSEFGTITSCKVMVDSNGHSKGSGFVAFSTPEEASKAVCQYAYLNFLLCLFQLNEMNGKMIQGKPLYVAVAQRKEVRKAFLQAQFSQFQAQIGIPSFPEFSQFQAPNGIPSFHAGYPGYPWATGLAPQQLYYDEGTPSYMTTQPIGYGFQQQLYPGMHSVDPNITMPYHHQRQGHPRQRMGYRRGGNRHHNQVIKHPLDLNFTLILYKQHY. | 531 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca10g03526 | 530 | Gene3D | - | 180 | 280 | IPR012677 | - | |
Seca10g03526 | 530 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 105 | 177 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | CDD | RRM2_I_PABPs | 103 | 178 | IPR045305 | - | |
Seca10g03526 | 530 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 19 | 89 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 107 | 175 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 302 | 357 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 198 | 265 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | CDD | RRM4_I_PABPs | 301 | 392 | - | - | |
Seca10g03526 | 530 | SMART | rrm1_1 | 197 | 270 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | SMART | rrm1_1 | 106 | 178 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | SMART | rrm1_1 | 18 | 91 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | SMART | rrm1_1 | 301 | 388 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 300 | 392 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | SMART | rrm2_1 | 197 | 269 | IPR003954 | GO:0003676 | |
Seca10g03526 | 530 | SMART | rrm2_1 | 301 | 371 | IPR003954 | GO:0003676 | |
Seca10g03526 | 530 | SMART | rrm2_1 | 106 | 178 | IPR003954 | GO:0003676 | |
Seca10g03526 | 530 | SMART | rrm2_1 | 18 | 91 | IPR003954 | GO:0003676 | |
Seca10g03526 | 530 | FunFam | Polyadenylate-binding protein | 187 | 282 | - | - | |
Seca10g03526 | 530 | Coils | Coil | 272 | 292 | - | - | |
Seca10g03526 | 530 | FunFam | Polyadenylate-binding protein | 10 | 102 | - | - | |
Seca10g03526 | 530 | SUPERFAMILY | RNA-binding domain, RBD | 298 | 403 | IPR035979 | GO:0003676 | |
Seca10g03526 | 530 | FunFam | Polyadenylate-binding protein | 103 | 186 | - | - | |
Seca10g03526 | 530 | PANTHER | RNA BINDING PROTEIN | 18 | 79 | - | - | |
Seca10g03526 | 530 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 17 | 95 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | Gene3D | - | 13 | 104 | IPR012677 | - | |
Seca10g03526 | 530 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 196 | 274 | IPR000504 | GO:0003723 | |
Seca10g03526 | 530 | Coils | Coil | 297 | 317 | - | - | |
Seca10g03526 | 530 | SUPERFAMILY | RNA-binding domain, RBD | 17 | 184 | IPR035979 | GO:0003676 | |
Seca10g03526 | 530 | Gene3D | - | 105 | 179 | IPR012677 | - | |
Seca10g03526 | 530 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 18 | 508 | IPR006515 | GO:0003723 | |
Seca10g03526 | 530 | Gene3D | - | 281 | 401 | IPR012677 | - | |
Seca10g03526 | 530 | CDD | RRM3_I_PABPs | 195 | 275 | - | - | |
Seca10g03526 | 530 | SUPERFAMILY | RNA-binding domain, RBD | 188 | 280 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca10g03526 | Seca-Chr10 | 64638000 | 64640873 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca10g03526 | 16 | 506 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 54.545 | 0.0 | 533 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca10g03526 | K13126 | - | gmx:100783163 | 692.96 |