Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03518 ATGGCAAAGCGAGCAGCACCATCCTCATTTTCCTTCACATGTCAATGGACTTATGATGTCTTTCTCAATTTTAGAGGTGAAGACACTCGACACAATTTCACCGGTACTCTCTATAATGCTCTGCTTGAAAAAGGAAATCACACTTTCATTGATGAAGAAGGGCTTAGAAGAGGGGAAGAAATCACACAAGCTCTTCTCAATGCCATTCAAGAATCAAGAATCGCAATCATTGTTTTCTCTAAGAATTATGCATTTTCAACACATTGTTTGGATGAGCTTGTCCAGATCCTTGAGTTCTTAAAACCACAAGGTCGATTGGTGTGGCCAATTTTTTATGACGTGGATCCATCACAAGTTCGACATCAGACAGGGACTTATTCAGAAGCCTTGGCAAAACATGAGGAAAGGTTCCAGAATGACAAGGTGCAGAAATGGAGGAAGGCTTTATGTCAAGCAGCTAATCTATCAGGCTGGCATTTCCAACATGGTTCTGAATCAGAATATAAGTTTATTAAAAAGATTGTTGAAGAGGTCTCAAAAAAGATCAGTCACACTCCTTTACATGTTGTTGATCACCCAGTTGGGCTAGAGTCTGTGCTGCTAGAACTGCAATCCCTCCTAGGACTTGGTTCTGATGTAAACATGGTAGGCATTTATGGCATTGGTGGAATAGGTAAAACAACAATTGCTCGTGCTGTTTATAACTTGATTGCTGATCAATTTGAAGGTTCATGTTTTCTTGCTGATATTAGAGAAATTGCAATTAATAAGCATGGTCTTGTACAACTCCAAGAAATGCTACTTTCTGAAATACTCAGGGAGAAAGATATCAAAGTAGGAAATGTCAATCAAGGAATTCCAATAATAAAAAGGAGGCTCCAACAAAAGAAGGTTCTTTTGGTTCTGGATGATGTTGACAAACTGGTGCAGTTAAAGATACTTGCAGGAGGATATGATTGGTTTGGCTCTAGCAGCAAGATCATCATCACAACAAGAGACAAACAGTTGCTAGATACTCATGGGGTAGTAAAATTACATGAGGTTAAACCATTAAGTGATGAAAAAGCTCTTGAATTGTTCAGTTGGCATGCCTTTAAAAGTAGTAAAATTGATCCAAGTTATGTGGATATTTCAAACCGTGCAGTTTTTTATGCCTGTGGCCTTCCATTGGCTTTGGAAGTGATAGGTTCTCACTTATTTGGTAAAAGTTTAGGTGAATGCAATTCTGCATTAGATAAATATGAAAGAGTTCCTCATAAAGAGATACATGAAATTCTTAAAATGAGCTATGATGGTTTGGGAGAAGATGAGAAGGGAATTTTCCTTGACATTGCGTGTTTCTTCAATAAATACGAAATGGACTATGTCAAACAAATGCTATGCACTCATGGTTTTCATGCAGAAGATGGTATCAGAGTGTTGGTTGATAGATCTCTTATAAAGATTGATGCTATTGGTTTTGTGAAAATGCATGACTTAATTCAAGACATGGGCAGAGAAATCGTAAGGCAAGAATCAAAATATGAGCCTGGAAAACGCAGCAGGTTATGGTTTGAAGGGGATATAATTCATGTTTTAGAAGAAAATACGGGAACTGATAAAGTTGAATTCATTAAGCTGGATGCGTACAACAAGAAGGAAGTGCAGTGGAGTGGAAAAGCCTTGAAGAAGATGAAAAACCTGAGAATTCTGATTATTAGAAATGCAGTGTTTTCTAGAGGCCCCAAGCATCTACCAAATAGTTTGAGAGTGCTAGATTGGAGTTGTTATCCATCACAGTCTTTACCATCAGATTTCAGTCCTAAACAACTTGAGATGCTCCATATGCCTAAAAGTTGCTTTAAATTCTTCCAACCTCCCAAGAGGTTGGAATCCTTAACTTCAATAAGTTTTGAAGATTGCAAGTTCTTAACTGAACTTCCAAGCCTAAGTGCAGCACCATCCTTAATGAACCTGTCCCTTGATAACTGCACAAATTTAGTTAAAATTCATGATTCTGTTGGGTTTCTTGATAACCTCTGCTATTTGAGTGCTAAAAGATGCACCAAGCTAGAAATTCTGCTGCCCTGCATCAAGTTGACATCTCTTGAAATTCTGGATCTCCAAGGGTGCTCAAGCCTTAAGAGATTCCCAGAAGTACCGGAAAAGATGGAGAAAATAAGAGAAATTTATTTATACAATACAGCCATTAACAAATTGCCAATTTCCATTGGAAATCTTGTTGGGCTTGAACTATTATGGCTCATGCAATGTGAAAGGCTAAAACAGTTACCAGCTAGTATCCATATGTTACCTAAAGTTGAAGTAGTAGTGGGTTATGGGGATATGAGATTTGGGTATTTTGCAGGGAACCAAGAGAAAGAAAATTTAAGCTTAGAATTAGAAGTATCTCCAAGTGCTATGCTTGTTTATGAAAATGATAAGCTAGATTTTGTTACCCTTGACGTATATTATCCTTACACGAGTCCCAATAATGTGATCCAAGTAAGTAGTCCTAATCCAATAGTGCAAAGTGATTTTGAGTCATTGTTCAGAGAGATGTACAAACACTGGTACTCTGTGTTCTGGAAAACATCAACACGTTTCTCTTTCCGAAAGAAATTCCCAAAGATAGCTGTGTGTTGCTTTGTGATTCCTGGCTTGAAAAAGATCATGATGTTGGATTTCATGTTGAGTGTAGTCATAAATGGCACCAAACAGTTGAGTTGTTCATGTAACTACATAAGTTGTGCTGCATGGGGCCTGACACTTTGGTGTGATCTAGAGTGCAAAGTGGAGGAGGAGGAAGAAGGGGTGTTTTCTTCAGAGAATGAATGGAATCATGTTGAGATTTTATGTGAAGTGAATGGAACTGAAAGAGTAAGAGCAACTCAAAGGTGGTATGATAGAGAGAATTTGTGTTGGACCTTAATTGGTGTCTACGAGGAAGGGAACAACATGGAGGATGTTGAATTCAGAAATCCGGATTTTCCATCACCTGCTAGACAACCTGCATATCCTTTAAGCTGCTGCTCCTATTACGCAGTTACACACGCATGGGGAGTCTGGGGACGTGTAAGTCAAGGAATTATTTAG 3075 0.3837 MAKRAAPSSFSFTCQWTYDVFLNFRGEDTRHNFTGTLYNALLEKGNHTFIDEEGLRRGEEITQALLNAIQESRIAIIVFSKNYAFSTHCLDELVQILEFLKPQGRLVWPIFYDVDPSQVRHQTGTYSEALAKHEERFQNDKVQKWRKALCQAANLSGWHFQHGSESEYKFIKKIVEEVSKKISHTPLHVVDHPVGLESVLLELQSLLGLGSDVNMVGIYGIGGIGKTTIARAVYNLIADQFEGSCFLADIREIAINKHGLVQLQEMLLSEILREKDIKVGNVNQGIPIIKRRLQQKKVLLVLDDVDKLVQLKILAGGYDWFGSSSKIIITTRDKQLLDTHGVVKLHEVKPLSDEKALELFSWHAFKSSKIDPSYVDISNRAVFYACGLPLALEVIGSHLFGKSLGECNSALDKYERVPHKEIHEILKMSYDGLGEDEKGIFLDIACFFNKYEMDYVKQMLCTHGFHAEDGIRVLVDRSLIKIDAIGFVKMHDLIQDMGREIVRQESKYEPGKRSRLWFEGDIIHVLEENTGTDKVEFIKLDAYNKKEVQWSGKALKKMKNLRILIIRNAVFSRGPKHLPNSLRVLDWSCYPSQSLPSDFSPKQLEMLHMPKSCFKFFQPPKRLESLTSISFEDCKFLTELPSLSAAPSLMNLSLDNCTNLVKIHDSVGFLDNLCYLSAKRCTKLEILLPCIKLTSLEILDLQGCSSLKRFPEVPEKMEKIREIYLYNTAINKLPISIGNLVGLELLWLMQCERLKQLPASIHMLPKVEVVVGYGDMRFGYFAGNQEKENLSLELEVSPSAMLVYENDKLDFVTLDVYYPYTSPNNVIQVSSPNPIVQSDFESLFREMYKHWYSVFWKTSTRFSFRKKFPKIAVCCFVIPGLKKIMMLDFMLSVVINGTKQLSCSCNYISCAAWGLTLWCDLECKVEEEEEGVFSSENEWNHVEILCEVNGTERVRATQRWYDRENLCWTLIGVYEEGNNMEDVEFRNPDFPSPARQPAYPLSCCSYYAVTHAWGVWGRVSQGII. 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03518 1024 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 158 IPR035897 -
Seca10g03518 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 444 IPR027417 -
Seca10g03518 1024 Gene3D - 350 434 IPR042197 -
Seca10g03518 1024 Pfam TIR domain 18 186 IPR000157 GO:0007165
Seca10g03518 1024 PRINTS Disease resistance protein signature 385 399 - -
Seca10g03518 1024 PRINTS Disease resistance protein signature 691 707 - -
Seca10g03518 1024 PRINTS Disease resistance protein signature 215 230 - -
Seca10g03518 1024 PRINTS Disease resistance protein signature 292 306 - -
Seca10g03518 1024 Gene3D - 184 345 IPR027417 -
Seca10g03518 1024 Gene3D - 14 183 IPR035897 -
Seca10g03518 1024 Gene3D Ribonuclease Inhibitor 523 794 IPR032675 -
Seca10g03518 1024 SUPERFAMILY "Winged helix" DNA-binding domain 420 527 IPR036390 -
Seca10g03518 1024 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
Seca10g03518 1024 Pfam NB-ARC domain 211 412 IPR002182 GO:0043531
Seca10g03518 1024 SMART till_3 17 155 IPR000157 GO:0007165
Seca10g03518 1024 SUPERFAMILY L domain-like 538 769 - -
Seca10g03518 1024 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Seca10g03518 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 788 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03518 Seca-Chr10 64090950 64094898 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03518 12 770 WRKY Transcription Factor Family AT4G12020 33.503 4.31e-100 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03518 - - gmx:100802408 1282.32