Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03500 ATGTTAACAGTAATTAATGTGTATATTTCTGCTGCTATTGAAATAAATGGTAAATTAGTCCTAAATTGGTATGGTATACATGGTGTGGATCCCCTGGCTGATGATGATACATTGAGGAAACAATATAGAAAGCTGGTTCATTTGCTTCACCCTGATAATAACAAGTCCATTGGTGCAGATTGGGCCTTTAAACTAGTTTCACAGGCATGGAATATATTATCAGATAAGGCTAAAAGGGTAGCATATGATAAGAAGATAAATGCAAGGGCTCAGGGGAAAACTGCTGAAGAGATTAGCAAGAAACCAAGTAAAATTCAGACAGATTATAATGACAAAACAACAATGAAAGAGATCACTGGAAATGGCTACCAAAGAGCAAATGAGGAAGAAGGAAAATCTGTAAGAAACTCATATGGAAGAATGAATGAATCCGAAGTGATGAATTTATTTGCAGACACTACCACATATGATGACATGGAGGACATGTTATCAATAGATGCTCCAGATCCTCATTTCTATTATTTTGACATGGATCGAATTAAAGGATCTTTTGGTGAAAATCAAGTATGGTCTGCATTTGATGAAGAAGAAGGGATGCCTCAATTTTATGCAATAATACACAATGTCATTTCTATGAATCCATTCAAGATGCAGTTCAGCTGGCTCGAGATGAAGAAAACCAAGGTTGAAAGGACCCCAACTCTGAATTGTGGTGCGTCACGCTTTTCAAGAGCTTGTGGGAATTTCAGAATGGGAAGACATGCAATCACTAACACATTCAATTTTTTCTCTCACAAAGTGAGATATGAAAAGGGTAATGATGGAACATTTTTTATATATCCCAAGAAAGGGGATGTTTGGGCACTCTATAGAAATTGGTCTTCAAAATGGAATAGACAAACACCTGATGAGGTGACACAAAAGTATGATATGGTTGAAGTACTTGATGTTTTCAATGATTTCATTGTCATTCCTCTTGTCAAAGTGGCTGGTTTCAGGACAATATTTCGCCGTGAGTTGGATTTGAGAGAAATTAGGGTCATTCCAAGGAAAGAAATATTGCGGTTCTCTCATCAGGTTCCTTCAACCATACTTAGTGGTGAAGAAGCTCCAGATGCCCCCAAAGGGTTGCTAGGAGTTGGACCCAGCAGCTATTTCATCTGA 1164 0.3771 MLTVINVYISAAIEINGKLVLNWYGIHGVDPLADDDTLRKQYRKLVHLLHPDNNKSIGADWAFKLVSQAWNILSDKAKRVAYDKKINARAQGKTAEEISKKPSKIQTDYNDKTTMKEITGNGYQRANEEEGKSVRNSYGRMNESEVMNLFADTTTYDDMEDMLSIDAPDPHFYYFDMDRIKGSFGENQVWSAFDEEEGMPQFYAIIHNVISMNPFKMQFSWLEMKKTKVERTPTLNCGASRFSRACGNFRMGRHAITNTFNFFSHKVRYEKGNDGTFFIYPKKGDVWALYRNWSSKWNRQTPDEVTQKYDMVEVLDVFNDFIVIPLVKVAGFRTIFRRELDLREIRVIPRKEILRFSHQVPSTILSGEEAPDAPKGLLGVGPSSYFI. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03500 387 PANTHER BNAC03G44070D PROTEIN 1 382 - -
Seca10g03500 387 Pfam Domain of unknown function (DUF3444) 164 369 IPR024593 -
Seca10g03500 387 SUPERFAMILY Chaperone J-domain 19 88 IPR036869 -
Seca10g03500 387 ProSiteProfiles dnaJ domain profile. 22 86 IPR001623 -
Seca10g03500 387 Pfam DnaJ domain 22 83 IPR001623 -
Seca10g03500 387 PRINTS DnaJ domain signature 24 42 IPR001623 -
Seca10g03500 387 PRINTS DnaJ domain signature 58 78 IPR001623 -
Seca10g03500 387 PRINTS DnaJ domain signature 42 57 IPR001623 -
Seca10g03500 387 PRINTS DnaJ domain signature 78 97 IPR001623 -
Seca10g03500 387 ProSitePatterns Nt-dnaJ domain signature. 63 82 IPR018253 -
Seca10g03500 387 Gene3D DnaJ domain 21 157 IPR036869 -
Seca10g03500 387 CDD DnaJ 22 75 IPR001623 -
Seca10g03500 387 SMART dnaj_3 21 78 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03500 Seca-Chr10 63244698 63245861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03500 1 87 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.659 1.38e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03500 - - cpap:110823946 350.132