Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03489 ATGAAGGTTGCGGCTAGCAGTAACTTGAAAAGAGTTTCACTTGAATTAGGAGGCAAATCACCCCTCATAATTTTTTATGATGCTGATATAGTCAAAGCTGCTGAGCTTGCTTTATTTGGCCTCCTATTTAACAAGATCATTGCAATCTCAGATATTTTACCGCAAGCAATTGTAATGGGTATGATCGGGAGTTGCTTCTCTTTCATAGCAGGGACAACCATTGGGGTTTACTTGCCTCAGAACTATCAAATTCCTAACCTCAGGAAGCTAGCTGACACTGCCTTGATCGAGAAGAAGGGTGCTGATGATGATAACTACGTTTAG 324 0.4105 MKVAASSNLKRVSLELGGKSPLIIFYDADIVKAAELALFGLLFNKIIAISDILPQAIVMGMIGSCFSFIAGTTIGVYLPQNYQIPNLRKLADTALIEKKGADDDNYV. 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03489 107 Pfam Domain of unknown function (DUF4535) 64 95 IPR027854 -
Seca10g03489 107 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 20 45 IPR016163 GO:0016620
Seca10g03489 107 SUPERFAMILY ALDH-like 1 44 IPR016161 GO:0016491
Seca10g03489 107 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 2 19 IPR016162 GO:0016491
Seca10g03489 107 Pfam Aldehyde dehydrogenase family 4 44 IPR015590 GO:0016491
Seca10g03489 107 PANTHER OS07G0239500 PROTEIN 59 98 - -
Seca10g03489 107 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 14 21 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03489 Seca-Chr10 62614598 62615529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03489 1 45 Aldehyde Dehydrogenase Gene Family AT3G24503 73.333 2.55e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03489 K12355 - gmx:100817721 71.2478