Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03481 ATGTCCCTTCTACCCAGCCATTCCTTATTTAACATTCATTCTTATCCATCATTACACAGACAAAAGAAGAAACACAAGCCAAGTACTGTAATCATGATGCTCAAAATAGAACCTTTTCTACTTTTTGTTATCCTCTCCATAGTTTCAGTTTCTTCCATCCCACCAGGCTCAACCCTTTATGCTTCAGACACAAGCCAAACATGGTCCTCTCCCAACAACACATTCACTCTGAATTTTCTTCCTGTCCAACCCCCAACATCTCCTCCTTCCTTCATGGTTGGTATTGTCTACTCTGGTGCCGGTGGTGGCGCCTCCGTGGACTCCGGCGGCTCATTCAAATTGCTCTCAGCTGGCAGCCTCCAACTTGTTAATGGCTCTGGCATCACAGTATGGGACTCAGGTACTTCCCATCTGGGTGTCTCCTCTGCCTTCCTTGATGAGCAAGGCAACTTGGTTCTCTCTAATGGCACTAGTACTGTGTGGTCCAGCTTCAACTACCCAACTGATACCATTGTGGTGTCTCAAAACTTCACTCCTAATATGGTTTTACTATCTGGGTTGTATTCATTTAGGTTTCACTCTTTAGGTAATGTCATGCTTAGATGGAATGAAAGTGTTGTGTATTGGAGTGCCTTGAATGATTCTGGAAATGGGGCTTTAACTTTGCCTGTATTAGGATTGCAGCCCAAAGGGATACTATCAGTTCATGATCCAAATTTGACAAGGGAAGTCATTGTTGCCTTTAGCAGTGACCATGAAGAAGGAAGTGATGTTCTGAGAATTTTGAAGTTGGATGGTGATGGGAATTTGAGGATTTATAGTTCTTCAAAAGGAAGTGGAACTGCAATCATTAGGTGGGCTGCTTTGGGAGATCAATGTGAGGTTTTTGGATACTGTGGAAAGTATGGTATTTGTAGTTACAAGGACTCAGTTCCTATTTGTGGATGCCCATCTCAGAATTTTGAGATGATTGATCCAAATAATGGAAGGAAAGGGTGTAGGAGGAAGGTGAAGCTAGAGGATTGTCCTGGAAGGGTGGGAATGTTGCAATTGAACCATGCTCTACTCTTGACTTACCCTCCTCTATTCTTGATTAACCCTGAGGTGTTGTATATTCCTATATCACCTTGTAAAGGTAATTGTCTAGCAACTGATTCTTGTTTTGCTTCTACTTCCTTGTCAGATGGAACAGGATTGTGTTACCTAAAGACAACAGATTTTTTTAGTGGTTATCAGAGTCCTGCTGAACTCAGCACTTCATATATCAAGGTATGTCTACCACTGGCTCCAAATCCAATTTCACTACCAGTTCCTGGGAAGGGAAATGATTGGAGATTACATGCTTGGATAGTACTGGTACTTGTTTTAGGTACCCTTTTGGCTTTAATTGCCTTTCAGGGTGGTTTATGGTTTTGGTGTTGTAGAAATAGCCCAAGATTTGGAGGATTGTATGCTCAGTATGCTCTGCTGGAGTATGCTTCTGGTGCACCAGTTCAGTTCTCATACAAGGAGCTCCAAGGCTTAACAAATGGGTTTAAAGAGAAGCTTGGTGCTGGAAGATTTGGTTCAGTTTATATAGGAAAACTTGGTAATGGAACCATTGTTACAGTTAAGAAACTTCAGGGAATTGAACAAGAAGAGAAACAATTTAAGTTGGAAATTGCTACCATGTGTAGTACTCACCATATAAATTTGGTGAGACTGATTGGTTTTTGCTCTGAAGGGCAACACAAGCTTTTGGTATATGAGTACATGAAAAATGGTTCTCTTGATAAGTTTCTCTTTGTGACAGAAGAACAATCAGGAACAGTGTTGGATTGGGAGTGTCGGTTCAATATTGCCCTGGGATCTGCAAGAGGTATCATGTACATTCATGAGGAGTGTCGAAATTGCATAGTCCATTGTAATATAAAACCTGAAAACATTCTTTTAGATGAGACTTTCAAGCCCAAAATCTCTGATTTTGGCCTTGTAAAACTCATAAGTCCTCAGGAAAACAGGTACCAAACCTTGTTAAATATGAGAGGAACCAAAGGGTATGTTGCTCCAGAGTGGCTTTCAAATCTTGTTGTAACTTCAAAATCTGATGTATACAGCTATGGTATGGTTTTGCTAGAGATAGTGAGTGGAAGGAGGAACTTTGAAATTTCAAAAGAGACCAATAATAAAGAGTTCTCAATTTGGGCTTATGAAGAGTTTGAGAAAGGTAATATCATGGCCATTGTTGACAAAAGACTACCTGAAAATGAAGTTAATTTGGATCAAGCAAGAAGGTTGATTCAAGTATGA 2289 0.405 MSLLPSHSLFNIHSYPSLHRQKKKHKPSTVIMMLKIEPFLLFVILSIVSVSSIPPGSTLYASDTSQTWSSPNNTFTLNFLPVQPPTSPPSFMVGIVYSGAGGGASVDSGGSFKLLSAGSLQLVNGSGITVWDSGTSHLGVSSAFLDEQGNLVLSNGTSTVWSSFNYPTDTIVVSQNFTPNMVLLSGLYSFRFHSLGNVMLRWNESVVYWSALNDSGNGALTLPVLGLQPKGILSVHDPNLTREVIVAFSSDHEEGSDVLRILKLDGDGNLRIYSSSKGSGTAIIRWAALGDQCEVFGYCGKYGICSYKDSVPICGCPSQNFEMIDPNNGRKGCRRKVKLEDCPGRVGMLQLNHALLLTYPPLFLINPEVLYIPISPCKGNCLATDSCFASTSLSDGTGLCYLKTTDFFSGYQSPAELSTSYIKVCLPLAPNPISLPVPGKGNDWRLHAWIVLVLVLGTLLALIAFQGGLWFWCCRNSPRFGGLYAQYALLEYASGAPVQFSYKELQGLTNGFKEKLGAGRFGSVYIGKLGNGTIVTVKKLQGIEQEEKQFKLEIATMCSTHHINLVRLIGFCSEGQHKLLVYEYMKNGSLDKFLFVTEEQSGTVLDWECRFNIALGSARGIMYIHEECRNCIVHCNIKPENILLDETFKPKISDFGLVKLISPQENRYQTLLNMRGTKGYVAPEWLSNLVVTSKSDVYSYGMVLLEIVSGRRNFEISKETNNKEFSIWAYEEFEKGNIMAIVDKRLPENEVNLDQARRLIQV. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03481 762 SMART blect_4 59 167 IPR001480 -
Seca10g03481 762 Gene3D Transferase(Phosphotransferase) domain 1 585 762 - -
Seca10g03481 762 PIRSF SRK 24 762 IPR024171 GO:0004674
Seca10g03481 762 Pfam Protein kinase domain 513 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03481 762 Gene3D - 48 165 IPR036426 -
Seca10g03481 762 Gene3D - 166 288 IPR036426 -
Seca10g03481 762 ProSitePatterns Protein kinases ATP-binding region signature. 516 539 IPR017441 GO:0005524
Seca10g03481 762 Pfam S-locus glycoprotein domain 246 317 IPR000858 GO:0048544
Seca10g03481 762 FunFam serine/threonine-protein kinase PBS1-like 484 584 - -
Seca10g03481 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 49 166 - -
Seca10g03481 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 167 288 - -
Seca10g03481 762 ProSiteProfiles Bulb-type lectin domain profile. 44 166 IPR001480 -
Seca10g03481 762 SUPERFAMILY Protein kinase-like (PK-like) 493 749 IPR011009 -
Seca10g03481 762 PANTHER OS07G0415500 PROTEIN 36 762 - -
Seca10g03481 762 Gene3D Phosphorylase Kinase; domain 1 485 584 - -
Seca10g03481 762 ProSiteProfiles Protein kinase domain profile. 510 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03481 762 ProSiteProfiles Bulb-type lectin domain profile. 168 285 IPR001480 -
Seca10g03481 762 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 762 - -
Seca10g03481 762 SUPERFAMILY alpha-D-mannose-specific plant lectins 100 210 IPR036426 -
Seca10g03481 762 Pfam D-mannose binding lectin 108 180 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03481 Seca-Chr10 62429945 62432254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03481 483 746 Receptor kinase-like Gene Family AT5G20050 40.647 7.03e-62 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca10g03481 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03481 - - gmx:100810753 968.378