Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03480 ATGCTGACACTGGAAGCCTCCCTTTTGCTTTCTCTTCTCTCAACCATCTCAGTTGTTGCCATTTCACCAGGCTCAACTCTTTATGCTTCAGATACAAGCAAAACATGGTCATCTCCCAACAACAGATTCTCTCTACAGTTCCTTCCAGTCCAACCCAAAACACATCCTCCTTCCTTCATAATTGGTATTGTCTTCTCTGGAGGTGTCCCTATCATTTGGACAGCAGGTCACGGTGCCTCTGTGGACTACCACGGCTCATTCCGGTTTCTCTCCACCGGCAACCTCCGCCTCGTTAGCGGTTCCGGCACCGCCGTATGGGACTCCGGAACTTCCCATCTGGGTGTCTCCTCTGCCTTCCTTGACGATCAAGGCAACTTGATTCTCTCTAATGGCACCAGTACTATATGGTCAAGCTTTGACCATCCCACAGATATCATTATGCCGTCTCAGAACTTCAGAGTTGATATGGTTTTGCGGTCGGGTTTGTATTCATTTAGGCTTGTTTCTTTTGGAAAGATCATGCTTAGATGGAATGATAGTGTGGTGTACTGGAATAAAAGAATTGATTTACCCATTGTTGGTCAAAGCAATGGCTTTGCAGAAGGAAAAAGTGATGAGCTGAGAATTTTGAAGTTGGATAATGATGGGAATTTGAGGATCTATAGCTCCATTAGGGGAAGTGGATCTGCAGAGATCACATGGGTTGCTATTCAAGATCAATGTGAGGTTTTTGGATATTGTGGAAATTATGGTATTTGTAGTTACCAGGATTCAGGTCCTGTTTGTGGATGCCCAACTCAGAATTTTGAAATGGTTGATCCAAATGATAGCAGGAAAGGGTGTAAGAGGAAAGTGAAATTAGAGGATTGTCCTAAAAAAGTAACTATGGCCACACTGGATAATACTATGCTCTTTCCTGAGGATGAGGATTCAGAGAGTTTTTATATTGCTATATCTGGTTGTAGAAGAAATTGCCTCTCAGGTTCAGGTGCTTGTTTTGGATCCACTTTATTACAAGATGGAACAGGAAGGTGTTACATAAAAGCAACAGACTTTATCAGTGGTTATCGAAATCCAGCCCTAACTAGCATTTCATTTATCAAGGTATGTGCACCAGTGGTTCTATCAGAGCCTGGGAAGGGAAAGGATCAGAGGATACATTATTGGATACCAATGGTAGTTTTAGGTACTCTTGTAGCTTTTATTGCCTTTCAAGCTGGTTTATGGTTATGGTGTAGAAGAAACAGCTCAAGATTTGGTGGAGTCTATAATGAGTATGCTCTTTTGGAGTATGCTTCAAGTGCACCAGTCCAGTTTTCCTACAAGGAGCTGCAAGGCTTCACAAGTGCGTTTAAGGAGAAGCTTAGTGTTGGAAGATTTGGTTCTATTTATAGAGGAATTCTTGATAATGGAACTGTGGTTGCTGTTAAGAAACTTGAGGGAATAGAACATGAAGACAAACAGTTTGGGTTGGAAATTGCTACCATATGCAGTACCCATCATTTGAACTTGGTGAGACTGATTGGTTTTTGCTGTGAAGGGCAAAACAGGCTTTTGGTATATGAGTTCATGAAAAATGGGAGTCTTGATAATTACCTTTTTGAAACAGGAGATTCGACATTGTTGAATTGGCAGTGTCGGTTCAACATTGCCCTGGGTTCTGCAAAGGGTATCACCTATCTTCATGAGGGGTGTCGAACTTGCATAGTACATGGTGACATAAAACCTGAAAACATTCATTTGGATGAGAATTACAAAGCCAAAATCTCAGATATTGGTCTTGTAAATCTCATGAGTCCTAAGGACCGCAGGTACAAAACCCTGTCAAATATGAGAGGAGCTAAAGGATATGAAGCTCCAGAGTTCCTTTCAAATCATTCTTTTACTTCCAAATCAGATGTTTACAGCTATGGTGTGGTTTTGCTGGAAATTGTGAGGGGAAGAAGGAACTCTGAAATCTCAGAAGAAACATATAACAAAGATCTCTCAATTTGGGCATATCAAGAGTTTGAGAAAGGTAACATCAAGGGCATAGTTGACAAAAGACTACTTGAAAATGAAGTTAATTTGGAACAAGTGAGAAGGGTCATTCTGGCAAGCTTTTGGTGCATTCAGGAGCAACCAGACCTTCGACCAACGATGGGTAAGGTCTTGCAAATACTAGAAGGTATTATAGAGGCTGAGAAGCCACCTCCTCCAAAAACTGTGAATAAAGAATTTTTTAGTGAAATTGGGGAATGCTTGAGAAGCAATGTAAGAGATGTCTTCACTGTCCCAGCTTCAGCACCAACTTGCTCTGCCCCATCATCTTCATCACTCCAGATTGAAGGTTTTTCCCATTTGGAATCAGAAGGGAACATGGAGAGTGAAATATCATCTCTTTAA 2385 0.4143 MLTLEASLLLSLLSTISVVAISPGSTLYASDTSKTWSSPNNRFSLQFLPVQPKTHPPSFIIGIVFSGGVPIIWTAGHGASVDYHGSFRFLSTGNLRLVSGSGTAVWDSGTSHLGVSSAFLDDQGNLILSNGTSTIWSSFDHPTDIIMPSQNFRVDMVLRSGLYSFRLVSFGKIMLRWNDSVVYWNKRIDLPIVGQSNGFAEGKSDELRILKLDNDGNLRIYSSIRGSGSAEITWVAIQDQCEVFGYCGNYGICSYQDSGPVCGCPTQNFEMVDPNDSRKGCKRKVKLEDCPKKVTMATLDNTMLFPEDEDSESFYIAISGCRRNCLSGSGACFGSTLLQDGTGRCYIKATDFISGYRNPALTSISFIKVCAPVVLSEPGKGKDQRIHYWIPMVVLGTLVAFIAFQAGLWLWCRRNSSRFGGVYNEYALLEYASSAPVQFSYKELQGFTSAFKEKLSVGRFGSIYRGILDNGTVVAVKKLEGIEHEDKQFGLEIATICSTHHLNLVRLIGFCCEGQNRLLVYEFMKNGSLDNYLFETGDSTLLNWQCRFNIALGSAKGITYLHEGCRTCIVHGDIKPENIHLDENYKAKISDIGLVNLMSPKDRRYKTLSNMRGAKGYEAPEFLSNHSFTSKSDVYSYGVVLLEIVRGRRNSEISEETYNKDLSIWAYQEFEKGNIKGIVDKRLLENEVNLEQVRRVILASFWCIQEQPDLRPTMGKVLQILEGIIEAEKPPPPKTVNKEFFSEIGECLRSNVRDVFTVPASAPTCSAPSSSSLQIEGFSHLESEGNMESEISSL. 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03480 794 Pfam D-mannose binding lectin 71 157 IPR001480 -
Seca10g03480 794 SMART blect_4 27 142 IPR001480 -
Seca10g03480 794 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 524 731 - -
Seca10g03480 794 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 17 141 - -
Seca10g03480 794 ProSiteProfiles Bulb-type lectin domain profile. 18 141 IPR001480 -
Seca10g03480 794 PANTHER OS07G0415500 PROTEIN 8 733 - -
Seca10g03480 794 PIRSF SRK 180 753 IPR024171 GO:0004674
Seca10g03480 794 PIRSF SRK 1 184 IPR024171 GO:0004674
Seca10g03480 794 SMART serkin_6 449 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03480 794 Gene3D - 18 140 IPR036426 -
Seca10g03480 794 CDD STKc_IRAK 455 724 - -
Seca10g03480 794 Pfam Protein tyrosine and serine/threonine kinase 451 720 IPR001245 GO:0004672|GO:0006468
Seca10g03480 794 SUPERFAMILY Protein kinase-like (PK-like) 431 722 IPR011009 -
Seca10g03480 794 Gene3D Transferase(Phosphotransferase) domain 1 524 739 - -
Seca10g03480 794 ProSiteProfiles Protein kinase domain profile. 449 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03480 794 Gene3D Phosphorylase Kinase; domain 1 421 523 - -
Seca10g03480 794 Pfam S-locus glycoprotein domain 202 265 IPR000858 GO:0048544
Seca10g03480 794 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 185 IPR036426 -
Seca10g03480 794 FunFam S-receptor-like serine/threonine-protein kinase 423 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03480 Seca-Chr10 62348533 62350917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03480 366 759 Receptor kinase-like Gene Family AT5G20050 33.652 1.08e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca10g03480 PK_Tyr_Ser-Thr 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03480 - - gmx:100795819 932.939