Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03479 ATGTACCTCAAAACCCACTTTCTGTTCCTCATCCTTGTCCTCTTCACCATATTCACCACCACCACCACTGCCATCACCCTTGGCTCCACCCTTTCAGCTTCCAACACCAACCAAGCATGGTCCTCGGAGAGCTCCACCTACTCCCTCCGCTTTGTCACTGTCGAGCCACCCACGACCCCTCCTTCCTTCATCGCCGCCATCGTCTACACAGGCGGGGCCCCCGTCGTCTGGTCCCCCGGTAACGCCACCGCAGTTGATTCCGGCGGGTCCTTCCAGTTTACGTCCTCCGGTGCCCTTCGTCTCGTCAACGGCTCCGGCGCCGCCGTCTGGGAGTCCGGCACCGGGAATCGCGGCGCCACTTCGGCTACCCTGCAAGAAGATGGCAATCTGGTAATTTCCAATGGCACAAGACCCCTTTGGTCTAGCTTTGACCACCCCAGTGATACCCTTTTGCCTTCTCAGAATTTCTCTGTTGGTAAGGTTCTGAAATCTGGGTCTTACTCCTTTAGTCTTACTGTGATAGGGAATTTGACCCTGAAGTGGAATAATAGCATTATTTTCTGGAATCAGGGTCTGAATTCTTCTGTGAATGTGAGTTTGAGTTCTCCTGTTTTGGGGTTGAATGACATTGGGATTTTGCAGCTTTTTGATGCAAAATTGATTACTCCTTATATTGTGGCTTATAGTAGTGACTATGCTGATGGGGGGAGTAATATTTTGAGGGTATTGAAGTTAGATAATGATGGGAATTTGAGGATTTATAGCACGTCTAGGGGTAGTGGAACTCCTACTTCTAGATGGGCTGCTGTTCAGGATCAGTGTCAGGTTTATGCTTACTGTGGGAACTATGGTATATGCAGTTATAATGATTCCAGCCCAATTTGTGGGTGCCCATCTGAAAATTTTGAGATGATTGATCCAAATGATAGCAGGAAAGGGTGTAGGAGGAAGGTCAGTCTTGATAATTGTCAAGGGAATGCAACTATGTTGACATTGGATCATACTAAGTTCTTGACTTATTCCCCTGACATCGATTCACAGTCGTTTTTTATGGGTATAGCAGCATGCAGGGGAAATTGTCTTTCTGGGTCAGATGCTTGTTATGCTTCTACTTCTTTGTCAGATGGCACAGGGCAATGTTACATAAAATCAGTAGATTTTGTCAGTGGATATCATAGTCCTGCACTACCTAGCACTTCCTATGTCAAGGTTTGTCCGCCACTGGCTCCAAATCCACCACCCTCTATGGGGGAGACTGTGAAGCAAAAGAGTTCCAAGGTGCCTGCTTGGGTTGTGGTGGTTGTCATTTTGGGTACCCTTCTAGTTTTGGTTGCCATTGAAGGTGGTTTGTGGATGTGGTGTTGTAGGAACAATGCAAGATTTGGGGGATTGTCTGCTCAGTATGCTCTTCTTGAGTATGCTTCTGGTGCGCCGGTCCAGTTCTCATACAAGGAGCTCCAACGCTCAACAAAGGGGTTTAAGGAAAAGCTTGGAGCTGGTGGATTTGGTGCTGTGTATAGAGGAGTTCTTGTTAACAAAACTGTTGTTGCAGTGAAGCAACTTGAAGGCATTGAGCAAGGTGAGAAGCAGTTTAGGATGGAAGTTGCAACTATAAGTAGCACTCATCATCTGAATTTGGTGAGGCTTATTGGCTTTTGTTCAGAAGGGCGCCACAGACTCTTGGTCTATGAGTTCATGAAAAATGGCTCTCTTGATAATTTTTTATTCTTGACAGAAGAACATTCAGGAAAACTATTGAATTGGGAGTATCGCTACAATATTGCCCTTGGCACTGCAAGAGGCATCACATACCTTCATGAGGAATGTCGTGACTGCATAGTCCATTGTGATATAAAACCTGAAAACATTCTGTTGGATGAGAATTACGTTGCTAAAGTCTCTGATTTTGGTCTTGCAAAGCTCATTAATCCCAAGGACCACAGGCATCGGACATTGACAAGTGTAAGAGGAACTAGAGGATATCTAGCCCCAGAGTGGCTTGCAAATCTTCCCATAACATCCAAATCTGATGTTTATAGCTATGGCATGGTTTTATTGGAGATTGTGAGTGGGAAGAGGAATTTTGAAGTCTCAGAGGAAACAAATAGGAAGAAGTTCTCCATTTGGGCCTATGATGAGTTTGAGAAAGGTAACATCAAAGGAATTTTGGACAAAAGACTAACTGACCAAGAAGTTGATATGGAGCAAGTGATAAGAGTGATTCAGGTAAGCTTTTGGTGCATCCAAGAGCAGCCGTCTCAGAGACCAACAATGAGTCGTGTAGTGCAAATGCTAGAAGGGGTAAAAGAGATTGAGAAGCCACCTGCCCCAAAATCTGTGGTTGAAGGGCCTATTAGTGGAACCAACACACACATCAGTAGCAATATCAGTGCATTCTCCACAGTTGGAGCTTCACCCCATGGCCCTTCCTCATCATCATCATTCCAAACTAGTGGTGTTTCAACCTTCACCTCTGGAAGGAACACTGATAAGGCAACTTCATCCCTTTTACAATCAGAACCATGA 2526 0.4545 MYLKTHFLFLILVLFTIFTTTTTAITLGSTLSASNTNQAWSSESSTYSLRFVTVEPPTTPPSFIAAIVYTGGAPVVWSPGNATAVDSGGSFQFTSSGALRLVNGSGAAVWESGTGNRGATSATLQEDGNLVISNGTRPLWSSFDHPSDTLLPSQNFSVGKVLKSGSYSFSLTVIGNLTLKWNNSIIFWNQGLNSSVNVSLSSPVLGLNDIGILQLFDAKLITPYIVAYSSDYADGGSNILRVLKLDNDGNLRIYSTSRGSGTPTSRWAAVQDQCQVYAYCGNYGICSYNDSSPICGCPSENFEMIDPNDSRKGCRRKVSLDNCQGNATMLTLDHTKFLTYSPDIDSQSFFMGIAACRGNCLSGSDACYASTSLSDGTGQCYIKSVDFVSGYHSPALPSTSYVKVCPPLAPNPPPSMGETVKQKSSKVPAWVVVVVILGTLLVLVAIEGGLWMWCCRNNARFGGLSAQYALLEYASGAPVQFSYKELQRSTKGFKEKLGAGGFGAVYRGVLVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNFLFLTEEHSGKLLNWEYRYNIALGTARGITYLHEECRDCIVHCDIKPENILLDENYVAKVSDFGLAKLINPKDHRHRTLTSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEIVSGKRNFEVSEETNRKKFSIWAYDEFEKGNIKGILDKRLTDQEVDMEQVIRVIQVSFWCIQEQPSQRPTMSRVVQMLEGVKEIEKPPAPKSVVEGPISGTNTHISSNISAFSTVGASPHGPSSSSSFQTSGVSTFTSGRNTDKATSSLLQSEP. 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03479 841 Pfam S-locus glycoprotein domain 236 298 IPR000858 GO:0048544
Seca10g03479 841 ProSiteProfiles Bulb-type lectin domain profile. 147 266 IPR001480 -
Seca10g03479 841 Gene3D - 146 270 IPR036426 -
Seca10g03479 841 PANTHER OS07G0415500 PROTEIN 9 777 - -
Seca10g03479 841 CDD B_lectin 34 146 IPR001480 -
Seca10g03479 841 Pfam Protein kinase domain 494 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03479 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 192 IPR036426 -
Seca10g03479 841 PIRSF SRK 1 821 IPR024171 GO:0004674
Seca10g03479 841 Gene3D Transferase(Phosphotransferase) domain 1 566 779 - -
Seca10g03479 841 Gene3D - 18 145 IPR036426 -
Seca10g03479 841 MobiDBLite consensus disorder prediction 800 841 - -
Seca10g03479 841 SMART serkin_6 491 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g03479 841 SMART blect_4 31 146 IPR001480 -
Seca10g03479 841 ProSiteProfiles Bulb-type lectin domain profile. 22 145 IPR001480 -
Seca10g03479 841 Gene3D Phosphorylase Kinase; domain 1 464 565 - -
Seca10g03479 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 146 269 - -
Seca10g03479 841 SUPERFAMILY Protein kinase-like (PK-like) 474 766 IPR011009 -
Seca10g03479 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Seca10g03479 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 145 - -
Seca10g03479 841 FunFam S-receptor-like serine/threonine-protein kinase 465 565 - -
Seca10g03479 841 ProSitePatterns Protein kinases ATP-binding region signature. 497 519 IPR017441 GO:0005524
Seca10g03479 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 566 775 - -
Seca10g03479 841 CDD STKc_IRAK 497 767 - -
Seca10g03479 841 Pfam D-mannose binding lectin 80 162 IPR001480 -
Seca10g03479 841 ProSiteProfiles Protein kinase domain profile. 491 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03479 Seca-Chr10 62341179 62343704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03479 464 775 Receptor kinase-like Gene Family AT5G20050 44.923 7.69e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca10g03479 Pkinase 1.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03479 - - cam:101506838 1360.13