Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03466 GAGAAATGTGTTTGGATTTCAATTCAATCCCTCCGAGATGCCAACCTTCCTAATTTCGATTTGAAGAAGAATGAGTGTGAGTATGACCACGAGAAACCAGAATCCGAATTAGAAGATGAAGAAAGCTTTTCGTATGTTGTGCAACTTGGAAACTCTATTGTGCTTCCCATGGCACTCCAATCTGCAACGAAGCTAGGCGTATTTGACGTCTTGCAAAAGGCAGGTAGAAGTCCTAAGCTCTCTTCCAAGGAGATTGCGTCTAAGCTTTCCTGCAATAATCCAGAAGCAGCTGCAATGTTAGATCGCGTCCATCTTCATTGTTTATACTTCATGCTACGCGATTGCCTTCAAGGGTTTCAGGTGTGTCATTCGTTGGGAGAAGGAACGGGATCTAGAATAGGAACACTGTTGATTTCGAAAATCAGGGAAGATCGTATTGATCACAAGTTTGATCTCATGTATGCCAAGCGTGCTTTTGTCCACTGGTACGTGGGTGAGGGTACGGAAGAAGGTGAATTTTCTGAAGCTCGTGAGGATCTGGTTAATAAGGACAATGTTGCTTTGATTTTTACTGGCACCTTGCATGAGAGAGATGTTCAAGAACTACTTGAAAAATGTCATCCACTGGGCATGTTTGACAATATTGCTACTCTGGCAGGGATGAATTTTGAAGGCAAACATATTGATGGCCATGATGTTCTGAAAATTTTTGCAGGACTGAAGGTGTTTGATAATATTCCTAAGTGGAATATTGTTGCTTGTACTTGTCTGATTGCTGGATTAATAACAACCAGAACCTTGCAGTTGGTAGCAATTCGATTGATTTGGGATTTGGAGGATGAGAATGATGGTCCATTTTTCTGTTTTTAG 870 0.4138 EKCVWISIQSLRDANLPNFDLKKNECEYDHEKPESELEDEESFSYVVQLGNSIVLPMALQSATKLGVFDVLQKAGRSPKLSSKEIASKLSCNNPEAAAMLDRVHLHCLYFMLRDCLQGFQVCHSLGEGTGSRIGTLLISKIREDRIDHKFDLMYAKRAFVHWYVGEGTEEGEFSEAREDLVNKDNVALIFTGTLHERDVQELLEKCHPLGMFDNIATLAGMNFEGKHIDGHDVLKIFAGLKVFDNIPKWNIVACTCLIAGLITTRTLQLVAIRLIWDLEDENDGPFFCF. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03466 289 FunFam Caffeic acid 3-O-methyltransferase 25 115 - -
Seca10g03466 289 Pfam Dimerisation domain 57 102 IPR012967 GO:0046983
Seca10g03466 289 SUPERFAMILY Tubulin nucleotide-binding domain-like 113 144 IPR036525 -
Seca10g03466 289 SUPERFAMILY V-type ATP synthase subunit C 184 219 IPR036079 -
Seca10g03466 289 Gene3D Helix hairpin bin 143 183 IPR023123 -
Seca10g03466 289 Gene3D - 23 109 IPR036388 -
Seca10g03466 289 SUPERFAMILY "Winged helix" DNA-binding domain 38 103 IPR036390 -
Seca10g03466 289 SUPERFAMILY Tubulin C-terminal domain-like 144 181 IPR008280 -
Seca10g03466 289 PANTHER TUBULIN 145 180 IPR000217 GO:0005874|GO:0007017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03466 Seca-Chr10 61411303 61412443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03466 184 219 Primary Pumps ATPases(2) AT3G28710 88.889 1.16e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03466 K07374 - tpra:123922925 96.2857