Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03459 ATGGTGAGAAGGCAGGCTCTGTTTCTTGGGGATTCTGAATTCCAGCAGCTCCTTAACATATTCAACTGCTCATCCAATCTTGTCAGTCACCAAGTTCTCATAGAGAGCATGGATTGTGAGCGCACACATATTGGTCTTTATGCAAGTCGAGATATTGCTTTGGGTGAAGAGCTGACATATGACTATCAAGATGATCATCCAGAAAGTGTTCTGTCATCCATGCAAACTATCATGGTTGTTCTCTTACAAGAGAGTGAGGATGTTCGTGAGGATCTTATATCTATTCTACTGTCTACATTAGGTCGTGATCAAAGAGGGGCATTGACTGATATATTTTTACGAGGCAGTAATCTTATAACGGAAGCTCAAGGAAATCTTTGTGATGGCAAGATAAAGGTATTTGGTGGTGACAATATGCCAAAGCAGAAAGAAGTAATGAAGGCACTTCCCAAACCATTGCCTGCGTCTATGGTGGCTAGTTATATGCCAAACAAGAAAGAAGATGAAAAAGAGATGAGGAAGAGCAGGAAGAGGTCCCAGGCTTTGAACAGTTTGAATGCTGGCATTGTTGAGTACAAGAAACGTTTCTTACAAAGCATTTGA 603 0.4113 MVRRQALFLGDSEFQQLLNIFNCSSNLVSHQVLIESMDCERTHIGLYASRDIALGEELTYDYQDDHPESVLSSMQTIMVVLLQESEDVREDLISILLSTLGRDQRGALTDIFLRGSNLITEAQGNLCDGKIKVFGGDNMPKQKEVMKALPKPLPASMVASYMPNKKEDEKEMRKSRKRSQALNSLNAGIVEYKKRFLQSI. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03459 200 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 22 64 - -
Seca10g03459 200 SUPERFAMILY SET domain 22 65 IPR046341 -
Seca10g03459 200 Pfam SET domain 21 62 IPR001214 GO:0005515
Seca10g03459 200 Gene3D SET domain 18 71 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03459 Seca-Chr10 60156178 60159940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03459 22 67 C2H2 Transcription Factor Family AT2G23740 52.727 1.33e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca10g03459 SET 1.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03459 - K11267 gmx:100786757 81.6481