Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03449 ATGGCTATGGTTTCCGTCAGTTTCCATAAGGTGGCAAACCTGTGTGGGAGAAGGGAGACTTGGAGGTTGCGTCTGAAACTAATTAGGCTTTGGAAGATGTCTGCAGTGGCCACCCCAGATGATCCCTTCGCTCTGCATATGTTATTTGTGGATCAGGAGGGTCTCTGCATCGAGGCTGTTATCCATAAACACTTGATGCACCGATTCAGTAATTCCGTCATAGAAGGGGAGGTTTATAATCTTACTAATTTCTCTGTTACTCGGAACAGTGGGAAATTCAGAGCAACACACCATGACTACAAGCTTACCTTTAATGCAAACACAAGGATTGTTCCCTGTCCTTCCGTCACTATTCCGGACCATGGTCTGAGTCTGGTCAAGACATCTGATATCATGAAGACTAAAGGGTCTTCTCTGTACCTAATCGATTTCATGGGAATAGTTACGGGTATCTCCGAAGAGTTAAACTTAAGCAAGGAAGGGAGAAAAACACGCTTGATGCTGATCGATATGGTTGACGAAATGGGGAAGATCAGATGTGCTATATTTGGACAGCTCATTGATGTTGTTAAGGGGTATCTAACTCTTCCACTGTGTGGTTTGCCTGTTCTCATTATTCAGCTTGCCCGTGTTAATCTATACAGGGGTATTTTCCTTTTATGTGGACTTCTCTGTTTTCCTAAACCCATCACGACATGTTCACAAAACACTTTCATTGTCTGTTTTTGTTTTGCAGGGGAAGTTGGCATTCAAAACCTTTTGAATGCGTCCAAGCTGTTGTGGAATCCTGAAATTCCGGAGGCCGTGGAGTTCAAAAATGGGCTTGCTGTTCATGAGATTGAAACGGACGTTGCAATTTCCCTGATATCAGATAATAGTCGTCCTATTTCTATACGGGAGCAATTCCTTGAACTGAACCCCAGGAAGCGTTTGGGGGAGCTGAACAACCTTCTGGAGGATGGAACTTATATAGTCCATGGCACAATAACAGAGGTATTCCAGGAAGACGATTGGTGGTACATTGCATGCTCTTGCATGAGGGCTGTTGATTTCAGTCAAGGGTTCCCATTTTGCGATTGTTGCAAGCGTGAGGTGTATGACATGTCACCAAGGTACAAGATAAAGGTTCTTGTGTGTGATGAATCTGAATCAACTGAGTTGATTATGTTTGATGCGGAGTGTTATTCGCTAATTAACATACCTTGCAAGGGGCTCCTCTCGGATTCTAAGGTCCTATTTTTATTTGTCACACAAAAAAACTTTTTCTTTACTTCATGCCATTGTTGGATCGGATTGACTCACACTATTGTTCCTCATTCAGGCTTCGACGACGAGTCCATTAAAGTTCGGAAGATCTGTTTCGACCCAAGCATTATCAAAGAATATAAGGGACTGATTGATGATGAGACCCCTTTGAAGGTTTTCGCTCTCCCAAATTTAACATCTGACCTTATTCTGATTTGCTACTTTTACACTTATACATGA 1485 0.4263 MAMVSVSFHKVANLCGRRETWRLRLKLIRLWKMSAVATPDDPFALHMLFVDQEGLCIEAVIHKHLMHRFSNSVIEGEVYNLTNFSVTRNSGKFRATHHDYKLTFNANTRIVPCPSVTIPDHGLSLVKTSDIMKTKGSSLYLIDFMGIVTGISEELNLSKEGRKTRLMLIDMVDEMGKIRCAIFGQLIDVVKGYLTLPLCGLPVLIIQLARVNLYRGIFLLCGLLCFPKPITTCSQNTFIVCFCFAGEVGIQNLLNASKLLWNPEIPEAVEFKNGLAVHEIETDVAISLISDNSRPISIREQFLELNPRKRLGELNNLLEDGTYIVHGTITEVFQEDDWWYIACSCMRAVDFSQGFPFCDCCKREVYDMSPRYKIKVLVCDESESTELIMFDAECYSLINIPCKGLLSDSKVLFLFVTQKNFFFTSCHCWIGLTHTIVPHSGFDDESIKVRKICFDPSIIKEYKGLIDDETPLKVFALPNLTSDLILICYFYTYT. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03449 494 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Seca10g03449 494 SUPERFAMILY Nucleic acid-binding proteins 124 219 IPR012340 -
Seca10g03449 494 SUPERFAMILY Nucleic acid-binding proteins 319 407 IPR012340 -
Seca10g03449 494 Gene3D - 117 281 IPR012340 -
Seca10g03449 494 Gene3D - 300 429 IPR012340 -
Seca10g03449 494 Gene3D - 8 115 IPR012340 -
Seca10g03449 494 CDD RPA1_DBD_A_like 22 110 - -
Seca10g03449 494 Pfam Domain of unknown function DUF223 47 120 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03449 Seca-Chr10 56270240 56277412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03449 1 398 Core DNA Replication Machinery Family AT5G08020 20.142 9.59e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03449 - - lja:Lj6g3v0884310.1 299.286