Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03434 ATGACTGAAACTAAGTCAACTAGTAAAATTATCAAGAAACAGGACTCAAAAAAAGTTTGTGCTCTTAGCAATCAGCCTTCTAAGAAGCAGCATCGCAAAGGTGAAAACCCTATGCGATTCGTACCACCTCCCGACCCGCCTTCTGATTTTGGACATTCAGATTCCTGGATCTGTAAAAATTCTGCGTGTAGAGCGGTTCTATCTAAGGATGACACATTTTGTAGAAGATGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACAAGTGAATCTGCTCAAGGGGACTCCTGTGGACTGTCTTGCCACATCGAGTGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCATGGGCAACTGATGCAACTGGATGGTGGTTATTGTTGTGCCTCATGTGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGTTAAACATAGCAAAAGATGCTCGTCGTGTAGATGTACTATGTTACAGGATATATTTGAGCTACAGGCTTCTGGATGGGACTTCAAAATTTAAAGAACTGCATGAAACGGTAAAGGAGGCAAAGGCTAAACTGGAGACTGAAGTTGGTCCAGTTAATGGGGTTTCAGCCAAGATGGCACGTGGCATTGTCAGCAGGCTCCCCATTGCCAGTGATGTACAGAAACTCTGCTCTCTTGCTATTGAGAAAGCTGACGAGTGGTTGGCCAATGTTGCCATTGCAAATCCAGAATCCAGAGAAGGTTCACTTCCCGCTGCCTGCAAGTTTGTTTTTGAAGAGGTAACAGCTTCCTCAGTCAAAATCATTTTAATTGAAATGTCAAATGCATCCTCTAAGGACATTAAGGGATACAAGCTCTGGTATTACAAGAGTAGGGATGAATCACACAGTAAAGATCCTGTCTGTGTGTTTCCCAAAGCTCAGAGGAGGATTTTGATATCCAACCTCCAGCCCTGCACAGAATATACCTTTCGGATTATATCTTTCACAGATATGGGTGACCTGGGTCATTCTGAGGCCAAGTGTTTCACCAAGAGCATTGAGATATTGGAAAAAAATCCATCTTCATCAGCTGCCATGAATCATAAAAAGGAGAACCTTCAAACTGGAGGCAATTCTTCTGGCTCCAAAATGGAGCCTGATCCTACAATGGCAGACTCAGGATTTAAGGTTCGAGACCTTGGAAAAATATTGCATCTTGCTTGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTTTGCTGTGCTGATACGAGAACTTGCTGTATGCAAAGTGAAATGATCAAGCCTAATAATCCAGAAGAGAAGTTGCCTCCAGTTTCACGAGGCCTTGATCTAAATGTTGTTTCAGTGCCTGATTTAAATGAAGAACTTACTCCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGCACTCTGCAGCAGGTTGTTGAGGCAGACGATGATGCTGCTTCTCATGATCTGGGGAAAGATTGTATAGCAAGATCACATGGTAGTGGTGGTTCCCAAACATGGACACATGGGCCAACTGGAGAAGTGCCAGCTGTTGACTCTCGTGTAGATGCATGTAGGAAAAGAATGGCAAGCACAAATGAAAAGACACTTGATTCTGACAGTACCTTGATAAATGGATCTCCTTTACACGTATCTGATGGTTCATTCTCCTTAGATGAGCATTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTCAGGGTCATATCAAACAGGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGGCAACAGAGCAAGAACGTAGGGTGGTTAATACTTTCATCCAAACTCTGAGTGATGATCCAAGTAGTTTGGCAGGGCAATTAGTTGACTCTTTTTCTGATATTATATCCAACAAGAGGCCGAGAAATGGGTTCTGTAATAAGGCTGTGGCTTCAAATTAA 1953 0.426 MTETKSTSKIIKKQDSKKVCALSNQPSKKQHRKGENPMRFVPPPDPPSDFGHSDSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKFKELHETVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWLANVAIANPESREGSLPAACKFVFEEVTASSVKIILIEMSNASSKDIKGYKLWYYKSRDESHSKDPVCVFPKAQRRILISNLQPCTEYTFRIISFTDMGDLGHSEAKCFTKSIEILEKNPSSSAAMNHKKENLQTGGNSSGSKMEPDPTMADSGFKVRDLGKILHLAWAQEQGCFEGFCCADTRTCCMQSEMIKPNNPEEKLPPVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQVVEADDDAASHDLGKDCIARSHGSGGSQTWTHGPTGEVPAVDSRVDACRKRMASTNEKTLDSDSTLINGSPLHVSDGSFSLDEHFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLSDDPSSLAGQLVDSFSDIISNKRPRNGFCNKAVASN. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03434 650 Pfam Fibronectin type III domain 263 343 IPR003961 GO:0005515
Seca10g03434 650 MobiDBLite consensus disorder prediction 1 48 - -
Seca10g03434 650 MobiDBLite consensus disorder prediction 1 16 - -
Seca10g03434 650 MobiDBLite consensus disorder prediction 361 387 - -
Seca10g03434 650 MobiDBLite consensus disorder prediction 361 389 - -
Seca10g03434 650 Gene3D Immunoglobulins 256 354 IPR013783 -
Seca10g03434 650 PANTHER VIN3-LIKE PROTEIN 2-RELATED 11 645 IPR044514 GO:0010048|GO:0040029
Seca10g03434 650 ProSiteProfiles Fibronectin type-III domain profile. 257 356 IPR003961 GO:0005515
Seca10g03434 650 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Seca10g03434 650 CDD FN3 262 341 IPR003961 GO:0005515
Seca10g03434 650 SUPERFAMILY Fibronectin type III 264 346 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03434 Seca-Chr10 54704633 54712763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03434 55 641 PHD Gene Family AT3G24440 49.750 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03434 - - gmx:100780157 1179.08