Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03429 ATGGCAAGTCGGCTAAAGGAAGACGAGAAAAACGAGCGCGTGATTCGAGGTCTCCTCAAGCTTCAACCGAATCGCAGATGCATTAACTGCAACAGTTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGTGGAATACACCGGGAATTTACACATCGAGTGAAATCAATTTCAATGGCAAAATTTACTTCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAGAAATTTATTTTAAAGAATGGGATGCAGAACGTCATTCTTTCCCTGATAGCAGGCTCCGAGACTTTATTAAGCATGTTTACGTGGATAGAAGATTCACTGGAGATAGGACTTATGACAAACCACCAAGAGTAAAGGGGGGTGACAAAGATGATTCCTATGAAAACAGGAGAGTTGAGGCGTATCAAGGAGGATCAAAAAGCCCTCCATATGAGGAGACATATGAACGTCGTTATGGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGACCAAGAAAGTAGGCAATATGGTGATTATAAGAGAAGTCCTGGTCGCCCTCCAATTATCAATGATTGGCGTCGTGAAGATCGTAGAATATCAGATGGAGATCATAAGGTGGAAAGCCAATCTCCTGAGCGAGCTAAAGACCTGGATTCTTCAAGCCCGCCTGTGGTCCGACCTGTTAGAGATATTTTGGGAGAAAATGTAGTACCACTTCGGATAAGTGAACCTCCCAAATCAAACAGTGGAAGGGCTGCTGATGGCACAACATTGACACAGAGAACTGCTTCCTCTGGTAGCTTGGCTTCCAGCAACGAAAACCCAGTGGATGTTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGTACCTATTGCTCCAGCAATTCCTCAAGCCCAACAAACTTCTGTGCCTCAACCTGTTGTGCAGCCAGCAAATTCCAGTGATGACAATTGGGCCTCTTTTGATGTTGCTCCTGAGGCGAAAGCAACTCCAAGCCCTTCAAATTTAAATCCACTTGAATCTGTACTTTCCCAATTGTCTGTGCCAGCATCTTTACCTGCTCATGTATCTGGAGTCCAAGGTGATCCACATGTTGTAACAGGTATTTCTAAAGGCAGTGTGATAACATTACCAAGAACTGATGACTCATCTGTCTCACCTGCAGGACCTATTCCAGCATCAGCTCCCACTTCTGCTTCTGGAGCTGCAAGTATTAGCGGTTTTTCGGCTTTCCCACCCAGTGGTGCTTCAGTACCATCTACTGGATTGGCAACAGTATCGCCTCTTAATAATGTAGGACAGTGGGCCAGTTTGCAGCATCAGCAACCATCGTTCCCTACTGCAGTTAGTCAGTCTACTACTCAACAATTTGAACCACCAGTGGGTAGTGCTGTGAATAATCAGCCATGGGGTGTACCTTCTGTACCCACAGCACAAGGGCGTCCAATTACACCAATGCCACATGCACACCATCATGCTTCAAATCCTGCCAATGAGGCTATAAGCAGTGTTGTTTCTCAACCTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAAAAGAACTTCCTGAGGATCTGTTCACTGTAAAATACTCATCCTTCCCTGCTCCAGTTCTAGGTTGGCAAATGGGTGTTCCCCATGGCATGGGTATCTCAATGCAATATAATAATGCGGTGCCCATGCCGAGTTTTCCGCAGCCATCAAAGTCAACGAATCCATTTGATGTTAGCAGCAAACCAACCCCAACTTTTCCTTCCATGTCATCCTTGCAAGGTGCCCTGCCTAGTGTACCACCTTCAGGCGCAATGCACCCTTCAAACCTGGGCCATCCACCACATGTCTGGACTCCAGCGCCGTCATCCTTGCAAGGTGCCCTGCCTAGTATACCACCTTCAAGCGTAATGCACCCTTCAAGTCTGGGCAATCCATCACATGCCTGGACTCCACCCCTGTCATCATCGTATGTATCAGTCCTGCCTGCACAAGCACAGCCTCATGCATCAACATCAGGACCAAGGGCATACATGGGGCAACAAATGCCGAGTAACATACCAATGCCAAGGCAAGAAGTTGGGAATTTTGGTATTGAGGGAGCCGTTTTTGGGTTGGCAAATTCAGATCAACAGCTGGCCAGTAGGTTTTCAACCACTGCCACCCCTAACTCCTTCCCTTCGGGAGGGAACCCATTCGGATAA 2232 0.4655 MASRLKEDEKNERVIRGLLKLQPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVSALQEGGNQRAREIYFKEWDAERHSFPDSRLRDFIKHVYVDRRFTGDRTYDKPPRVKGGDKDDSYENRRVEAYQGGSKSPPYEETYERRYGDRSSPGGRSPGYDQESRQYGDYKRSPGRPPIINDWRREDRRISDGDHKVESQSPERAKDLDSSSPPVVRPVRDILGENVVPLRISEPPKSNSGRAADGTTLTQRTASSGSLASSNENPVDVKLETTKSLIDFDADPVPIAPAIPQAQQTSVPQPVVQPANSSDDNWASFDVAPEAKATPSPSNLNPLESVLSQLSVPASLPAHVSGVQGDPHVVTGISKGSVITLPRTDDSSVSPAGPIPASAPTSASGAASISGFSAFPPSGASVPSTGLATVSPLNNVGQWASLQHQQPSFPTAVSQSTTQQFEPPVGSAVNNQPWGVPSVPTAQGRPITPMPHAHHHASNPANEAISSVVSQPSAVEVKPSGRKELPEDLFTVKYSSFPAPVLGWQMGVPHGMGISMQYNNAVPMPSFPQPSKSTNPFDVSSKPTPTFPSMSSLQGALPSVPPSGAMHPSNLGHPPHVWTPAPSSLQGALPSIPPSSVMHPSSLGNPSHAWTPPLSSSYVSVLPAQAQPHASTSGPRAYMGQQMPSNIPMPRQEVGNFGIEGAVFGLANSDQQLASRFSTTATPNSFPSGGNPFG. 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03429 743 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 131 - -
Seca10g03429 743 MobiDBLite consensus disorder prediction 195 222 - -
Seca10g03429 743 SMART arf_gap_3 12 126 IPR001164 GO:0005096
Seca10g03429 743 Pfam Putative GTPase activating protein for Arf 13 119 IPR001164 GO:0005096
Seca10g03429 743 MobiDBLite consensus disorder prediction 120 143 - -
Seca10g03429 743 MobiDBLite consensus disorder prediction 578 616 - -
Seca10g03429 743 Gene3D Arf GTPase activating protein 2 127 IPR038508 -
Seca10g03429 743 SUPERFAMILY ArfGap/RecO-like zinc finger 11 119 IPR037278 -
Seca10g03429 743 PANTHER ARFGAP/RECO-RELATED 1 630 IPR044820 GO:0005096
Seca10g03429 743 MobiDBLite consensus disorder prediction 458 487 - -
Seca10g03429 743 MobiDBLite consensus disorder prediction 310 332 - -
Seca10g03429 743 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 126 IPR001164 GO:0005096
Seca10g03429 743 MobiDBLite consensus disorder prediction 120 284 - -
Seca10g03429 743 MobiDBLite consensus disorder prediction 458 529 - -
Seca10g03429 743 CDD ArfGap_AGFG 12 118 - -
Seca10g03429 743 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Seca10g03429 743 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Seca10g03429 743 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Seca10g03429 743 MobiDBLite consensus disorder prediction 257 284 - -
Seca10g03429 743 MobiDBLite consensus disorder prediction 509 523 - -
Seca10g03429 743 MobiDBLite consensus disorder prediction 578 607 - -
Seca10g03429 743 MobiDBLite consensus disorder prediction 724 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03429 Seca-Chr10 54449153 54457396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03429 12 118 C2H2 Transcription Factor Family AT4G21160 32.479 2.13e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03429 - - gmx:102669541 1019.61