Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03427 ATGAGGAAGAAAGCGTGTTCGAATCTCTTGTTCCTGATTGCGGTGTTCATAGGCACACTCTCTCTCAGTGTCTCATCATTCAAAGTCTCCGATGGAGGCCTCACAGATGCAGAAGCCATGTACATCAAACAACGCCAGCTTTTATACTACAGAGACGAGTTCGGTGACAGAGGAGAAGAAGTAACGGTGGACCCTTCTTTGGTGTTCGAAAACAACCGCATCAGAAACGCTTACATAGCTTTACAAGCTTGGAAGCAAGCCATTCTCTCTGATCCCCGGAACCTTACACAAAACTGGGTTGGCTCCAATGTCTGCAACTACACCGGTGTTTTCTGCGCTCCGGCGCTGGATAATCCCAAGATCCGCACTGTCGCCGGCATAGACCTCAACCACGGCGACATTGCAGGGTACCTCCCGGAGGAGCTAGGTTTACTCGTCGACCTTGCACTCTTCCATGTCAACAGCAACAGGTTCTGTGGAACGGTGCCTCACAAGTTTGAGAGGCTCAAAATCTTGTTTGAGTTGGATCTCAGTAATAACCGCTTCGCCGGGAAGTTCCCGGAGGTGGTGCTGCGGTTGCCGGAGCTGAAGTTTCTAGATCTGAGGTTCAACGAGTTTGAAGGAACTGTTCCGAAAGAGCTCTTTGATAAGGACCTAGACGCGATCTTCATCAATGACAACCGGTTCGTGTTTGACCTACCGGATAATTTCGGTAACTCGCCGGTGTCGGTGATTGTGCTGGCGAATAACCGTTTCCACGGTTGTGTACCTGCTGGAATTGGGAACATGAAGAACCTGAATGAGATAATTTTCATGAACAATGCATTCAGGTCTTGTTTACCAGAGGAAATAGGGTTGTTGAAGAACTTGACGGTGTTCGATGTGAGTATCAACCAGCTTTTGGGACCGTTGCCGGAGACTATAGGGAATGCGGTGAGTTTGGAACAGCTGAATGTGGCTCATAATTTGCTTTCTGGGAAGATTCCAGAGAGTATTTGTGCTTTGCCGAATTTGCAGAACTTCACTTATTCTTATAACTTCTTCACCGGTGAGCCGCCGAGGTGTTTGGCGTTGCCGGCATTTGATGACCGGAGAAACTGTTTGCCGGCGAGGCCGTTACAGCGCTCAGCAGCGCAATGTAAGTCGTTTTTGTCTCACCCTGTTGATTGCAACTCTTTTAGGTGTAAGGCTTTTGTTCCTTCTTTGCCTTCTCCACCACCCTCCCCTGTTTTCCCATCGCCATCACCGTCGCCGCCAGTGTCCTCTCCACCACCCTCTCCAGTGTACTTGCCACCACCTTCACCTTCGCCACCGCCTGTTTATTCACCGCCACCACCTCCTCCTCCGCCACCACCACCACCACCACCAGTCTACTCCCCTCCGCCACCACCTCCTTCACCACCACCGCCTTCGCCACCACCACCTTCACCACCTCCACCGGTCTATTCCCCACCGCCGCCTCCACCTTCACCGCCACCACCTTCTCCACCACCACCGCCTCCACCGGTCTATTCTCCACCTCCCCCGCCACCTTCACCACCTCCGCCATCTCCCCCACCACCCTCACCGCCACCGCCTGTGGCATCACCACCACCACCACCACCACCCTCCCCAACTCCAACGCCACCATATTGTGTCAGGCCTCCACCGCCGCCTCCGCCGCCACATTCACCACCACCACCGGCTCCTGTATTCTCCCCACCACCGCCTGTGCCTTACTACTACAGCTCACCTCCACCGCCATCGCCATCGCCGCCACCACCTCATCATTCTCCTCCACCACCACCTCACTCTCCTCCACCACCTGTTTATCCATATTTATCACCACCGCCACCTCCTCCTGTCCACTCTCCTCCACCACCACCAGTCTATTCCCCACCGCCACCATCTCCACCACCTTGTATAGAACCTCCTCCTCCTCCACCACCCTGTGAAGAGCATTCCCCTCCACCTCCTTCACCACAACCAGCACCTTATCTGCCACCACCTTCCCCATCTCCACCACCACCACCAGTAGTTTATGCTTCTCCACCACCTCCACCAGTTCAATATAGTTCACCACCACCACCGCCTACCCCTGTATATGAAGGGCCTTTGCCACCTGTGATCGGAGTCTCATATGCATCTCCTCCTCCTCCACCCTTCTATTGA 2151 0.5397 MRKKACSNLLFLIAVFIGTLSLSVSSFKVSDGGLTDAEAMYIKQRQLLYYRDEFGDRGEEVTVDPSLVFENNRIRNAYIALQAWKQAILSDPRNLTQNWVGSNVCNYTGVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHVNSNRFCGTVPHKFERLKILFELDLSNNRFAGKFPEVVLRLPELKFLDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCVPAGIGNMKNLNEIIFMNNAFRSCLPEEIGLLKNLTVFDVSINQLLGPLPETIGNAVSLEQLNVAHNLLSGKIPESICALPNLQNFTYSYNFFTGEPPRCLALPAFDDRRNCLPARPLQRSAAQCKSFLSHPVDCNSFRCKAFVPSLPSPPPSPVFPSPSPSPPVSSPPPSPVYLPPPSPSPPPVYSPPPPPPPPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPVASPPPPPPPSPTPTPPYCVRPPPPPPPPHSPPPPAPVFSPPPPVPYYYSSPPPPSPSPPPPHHSPPPPPHSPPPPVYPYLSPPPPPPVHSPPPPPVYSPPPPSPPPCIEPPPPPPPCEEHSPPPPSPQPAPYLPPPSPSPPPPPVVYASPPPPPVQYSSPPPPPTPVYEGPLPPVIGVSYASPPPPPFY. 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03427 716 Gene3D Ribonuclease Inhibitor 78 237 IPR032675 -
Seca10g03427 716 Gene3D Ribonuclease Inhibitor 238 362 IPR032675 -
Seca10g03427 716 FunFam Leucine-rich repeat extensin-like protein 1 78 239 - -
Seca10g03427 716 Pfam Leucine rich repeat N-terminal domain 80 112 IPR013210 -
Seca10g03427 716 FunFam Leucine-rich repeat extensin-like protein 5 240 379 - -
Seca10g03427 716 MobiDBLite consensus disorder prediction 406 562 - -
Seca10g03427 716 SUPERFAMILY L domain-like 78 359 - -
Seca10g03427 716 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 518 - -
Seca10g03427 716 PRINTS Proline rich extensin signature 411 427 - -
Seca10g03427 716 PRINTS Proline rich extensin signature 397 409 - -
Seca10g03427 716 PRINTS Proline rich extensin signature 449 470 - -
Seca10g03427 716 PRINTS Proline rich extensin signature 436 448 - -
Seca10g03427 716 MobiDBLite consensus disorder prediction 577 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03427 Seca-Chr10 54417235 54419415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03427 21 417 Leucine-rich Repeat extension Gene Families AT3G24480 75.628 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03427 - - gmx:106799218 689.493