Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03421 ATGCTTAATTACATTCGCTGCATGTATTCATCCAAGCTTTTCATTGAAGGCCTTTCATATGGAGTCGATGACCAGTCTCTTAGGGATGCATTTGCTAGCTTTGGAGATATAGTTGAGGCAAGGGTTATCACCGATAAAGACCCTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCACTAATCAGTCAACAAGTTCAGCTCTATCTGCCATGAATGGACAGGATCTCAATGGGTGA 240 0.425 MLNYIRCMYSSKLFIEGLSYGVDDQSLRDAFASFGDIVEARVITDKDPGRSRGFGFVNFSTNQSTSSALSAMNGQDLNG. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03421 79 SUPERFAMILY RNA-binding domain, RBD 10 79 IPR035979 GO:0003676
Seca10g03421 79 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 79 IPR000504 GO:0003723
Seca10g03421 79 SMART rrm1_1 12 79 IPR000504 GO:0003723
Seca10g03421 79 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 79 IPR000504 GO:0003723
Seca10g03421 79 Gene3D - 8 79 IPR012677 -
Seca10g03421 79 PANTHER GEO13361P1-RELATED 3 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03421 Seca-Chr10 53899390 53899629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03421 5 78 Eukaryotic Initiation Factors Gene Family AT4G34110 36.471 5.36e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03421 - - gmx:100499841 132.494