Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03419 ATGGACGACATGGAAGATGATGCGAGGTACCCTCCCAAGTCCTTCACTTTGAATCGCCAAAACCCTTCCCATCGCCAAAAACACCCAATTCGAGGTGCCCCATATCACCGACCAGCGACCACTCGCTACGAGGAGGAGGACGATGAAGACGAGGAACCCGAGGAATTCAACGATTACGACGACGAGGAAGACGACGACAACGAAGGGGAAAATGGGTATGGCGGGAATTTCGAAGACGATGACGGGTTCTTAAGGAACCCGAAGAAGAGGAAGGTACGAGGTGGTTCCTCCTCTGTTTCCAACTACGAGTTCGCGCCACGCGCCGCGAAATTCTCGTACGGGAATCGTAGTTCTGAGGAATGGACGGAGCATGCAACGTTTGTGCTGTTGGAGGTGTGGGGAGACAAGTTCCTTCAACTTGGGAGGAACAGTTTGAGGTCTGAGGAATGGAACGAGGTGGCTGAAAAGGTGTCTGAGGAGTTGAAGGTGGAAAGGACGGTGCCACAGTGTAGGAGTGTTTTGGATAAGCTGAAAAGGAGGTACAAGAAAGAGAAGGCTCGAATGGATGAAATGGGTTTGGGTGTGAATTCTTCTAAGTGGGCTTTTTTTAAGAAGATGGATATGTTGATGGCTTCATCTGCAAGGCAAGAGTATGGACTTGCTTGTGGGGTTGATTCCGGTGAATATGTGTTTATGAATACAAGGGTCTATTTGAATAGGTCTAATGGATTTGATGAGATGAGAGATAGTCCTGGTGAGTCTGAGACCTCTGGGGATGATGATTCTGATGGGCTTGCAGGGGAATCTGGGGGTGGTGGTGGTGGTGGTGGTGATGAGGAGGATGAGGAGGATGAAACTTCCTTTAGGGTGCTCGCTGATTCTATTCAGAAGTTTGGGAAAATATATGAGAAGATTGAGAATACTAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGTTGGATTTTAATAGAGAGTTGGAGCTGCAGAAAAAGCAGATTTTGGAAAGGGCTCAGGCTGAGATTGCAAAAATACAGGATGGAGATGAGGAGGACTCGGACTCTTCTGCGGAGAATCTCAGTGAATAA 1089 0.4821 MDDMEDDARYPPKSFTLNRQNPSHRQKHPIRGAPYHRPATTRYEEEDDEDEEPEEFNDYDDEEDDDNEGENGYGGNFEDDDGFLRNPKKRKVRGGSSSVSNYEFAPRAAKFSYGNRSSEEWTEHATFVLLEVWGDKFLQLGRNSLRSEEWNEVAEKVSEELKVERTVPQCRSVLDKLKRRYKKEKARMDEMGLGVNSSKWAFFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESETSGDDDSDGLAGESGGGGGGGGDEEDEEDETSFRVLADSIQKFGKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAQAEIAKIQDGDEEDSDSSAENLSE. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03419 362 Coils Coil 302 344 - -
Seca10g03419 362 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 113 349 IPR044823 -
Seca10g03419 362 Gene3D - 121 183 - -
Seca10g03419 362 MobiDBLite consensus disorder prediction 44 75 - -
Seca10g03419 362 MobiDBLite consensus disorder prediction 342 362 - -
Seca10g03419 362 MobiDBLite consensus disorder prediction 243 289 - -
Seca10g03419 362 Pfam Myb/SANT-like DNA-binding domain 119 208 IPR044822 -
Seca10g03419 362 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03419 Seca-Chr10 53612944 53616574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03419 288 346 Trihelix Transcription Factor Family AT3G14180 44.068 1.57e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca10g03419 Myb_DNA-bind_4 2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03419 - - gmx:100790166 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03419 10 53612944 53616574 Seca10g03419 10 53612944 53616574 ECH