Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03413 ATGGCCTGTTCCTCCTTCAAGATGCCCACCATCAAGTTTACCAAGCTCTTCATCAATGGAAATTTTGTTGATTCCCTTTCAGGAGGGGAATTTGAAACGGTAGATCCAAGAACAGGGGAGGTAATTGCAAGGATTGCAGAGGGAACAAAAGAAGACATTGACGTTGCTGTCAAAGCGGCACGTATGGCTTTTGATTATGGTCCATGGCCTCGCATGCCCGGCGTTGAGAGAGCAAAAATTATGATGAAATGGGCAGAGTTAATTGATCAAAACATAGAAGAAATAGCAGCATTAGATGCCATTGATGCTGGAAAGTTGTATCATCGGGTCAAGGCTATTGAAATTCCATCAGCAGCAAATACTATACGTTACTATGCTGGTGCTGCTGATAAAATTCATGGAGAGGTATTAAAACCTTCTCGTGAGTTGCATGCATATACTTTGTTAGAACCAATTGGTGTTGTGGGACATATCATTCCCTGGAATTTTCCCAGCTCCATGTTTGTGACCAAGGTTAGCCCTTCCCTGGCTGCTGGTTGCACAATGGTTCTCAAGCCTGCTGAACAAACACCTCTCTCAGCTTTGTTTTATGCTCATCTAGCTAAGCTGGCTGGAATTCCAGATGGAGTGCTCAATGTAGTACCTGGATTTGGCCAAATTGCAGGTGCTGCAATAAGCTCCCACATGGATATTGATAAGGTCAGCTTTACTGGTTCAACAGAAGTAGGCAGAGAAATAATGCAAGCTGCTGCTAGGAGTAATCTGAAAACAGTTTCACTTGAACTAGGAGGCAAGTCACCACTTCTAATATTTGATGATGCTGATGTGGATAAAGCTGTTGAGCTTGCTCTCTTGGGGGTAGTGTATAACAAGGGAGAAATTTGTGTTGCTGGTTCGCGTGTATTTGTTCAGGAAGGAATCTATGATGAATTTGAGAAGAAGTTGGTGGAGAAGGCAAAAGCTTGGGTTGTTGGGGATCCCTTTGATCCTAAAGTTCAACAAGGGCCTCAGGTTGACAAGAAGCAATTTGAGAAAATTCTTTCCTACATTGAACATGGAAAAAGAGAAGGGGCCACCCTTCTGACAGGTGGCAATAGAGTGGGCAACAAGGGCTACTACATTGAGCCTACAATTTTCTCTAATGTTAAGGAGGACATGCTTATTGCACAAGATGAAATATTTGGTCCTGTGATGGCCCTGATGAAGTTTAAGACCATGGAGGAAGCAATTAAAAGTGCTAACAACACCAGATATGGCTTAGCAGCAGGCATTGTGACCAAGAGCTTGGATACAGCAAACACTGTGTCAAGGTCAATTCGTGCTGGCATTATTTGGATCAACTGTTATTTTGCCTTTGGAAATGACATTCCTTATGGAGGTTATAAGATGAGTGGATTTGGAAGAGAGTTTGGAATGGAAGCCCTTTACAAATACTTACAAGTTAAATCTGTTGTAACACCCATTTACAATTCTCCTTGGCTTTGA 1485 0.4249 MACSSFKMPTIKFTKLFINGNFVDSLSGGEFETVDPRTGEVIARIAEGTKEDIDVAVKAARMAFDYGPWPRMPGVERAKIMMKWAELIDQNIEEIAALDAIDAGKLYHRVKAIEIPSAANTIRYYAGAADKIHGEVLKPSRELHAYTLLEPIGVVGHIIPWNFPSSMFVTKVSPSLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGQIAGAAISSHMDIDKVSFTGSTEVGREIMQAAARSNLKTVSLELGGKSPLLIFDDADVDKAVELALLGVVYNKGEICVAGSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKKQFEKILSYIEHGKREGATLLTGGNRVGNKGYYIEPTIFSNVKEDMLIAQDEIFGPVMALMKFKTMEEAIKSANNTRYGLAAGIVTKSLDTANTVSRSIRAGIIWINCYFAFGNDIPYGGYKMSGFGREFGMEALYKYLQVKSVVTPIYNSPWL. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03413 494 Pfam Aldehyde dehydrogenase family 24 484 IPR015590 GO:0016491
Seca10g03413 494 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 7 484 - -
Seca10g03413 494 FunFam Aldehyde dehydrogenase3 264 453 - -
Seca10g03413 494 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 18 283 - -
Seca10g03413 494 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 264 453 IPR016163 GO:0016620
Seca10g03413 494 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 260 267 IPR029510 GO:0016491
Seca10g03413 494 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 18 482 IPR016162 GO:0016491
Seca10g03413 494 SUPERFAMILY ALDH-like 6 490 IPR016161 GO:0016491
Seca10g03413 494 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 288 299 IPR016160 GO:0016491
Seca10g03413 494 FunFam Aldehyde dehydrogenase, putative 456 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03413 Seca-Chr10 53499483 53507268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03413 4 494 Aldehyde Dehydrogenase Gene Family AT3G24503 72.967 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03413 K12355 - gmx:100783920 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03413 10 53499483 53507268 Seca10g03413 10 53499483 53507268 PCT