Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03412 ATGCCCGGAACTGAAAGAGCACGAATTATGATGAAATGGGCAGACCTAATTGATCAAAACATAGAAGAAATAGCAGCATTAGATACAATTGATGCCGGAAAGTTATACCATTGGTGCAAAGCTGTTGACATTCCTGCAGCAGCAAGTACTATACGCTACTATGCTGGTGCTGCTGATAAAATCCATGGAGAGGTCTTAAAACCATCTAGGGAGTTGCATGCATATACTTTGCTGGAACCAATTGGTGTTGTGGGACACATTATTCCCTGGAATTTCCCTAGCACCATGTTTGTTGCCAAGGTTGGTCCTTCTCTGGCTGCAGGATGCACAATAGTTATCAAGCCTGCTGAACAAACACCTCTCTCTGCTTTGTATTACGCTCATCTAGCTAAGCTGGCTGGAATTCCAGATGGAGTGCTCAATGTTGTGCCCGGGTTTGGCCCAACTGCAGGGGCTGCAATAAGCTCACACATGGACATTGATAAGATCAGCTTTACTGGTTCAACAGAAGTAGGCCGTGAAATAATGCAAGCTGCAGCTAAGAGTAATTTGAAACCAGTTTCACTTGAATTAGGAGGGAAATCACCTTTCATAGTGTTTGATGATGCTGATGTGGATAAAGCTGCTGAACTTGCTCTCTTGGGCATCCTATTTAATAAGGGAGAAATTTGTGTAGCAGGTTCCCGTGTGTTTGTTCAAGAAGGAATCTATGATGAATTTGAGAAGAAGTTGGTGGAGAAAGCAAAAGCTTGGGTGGTTGGGGATCCTTTTGATCCTAAAAGTCAACAAGGGCCTCAGGTTGACAAGAGGCAATTTGAAAAAATCCTTTCCTATATTGAGCATGGAAAGAGAGAAGGGGCCACCCTTTTGACAGGTGGTAAAAGAGTGGGCAACAAGGGTTACTACATTGAGCCTACTATTTTCTCCAATGTTAAGGAGGACATGCTTATAGCAAAGGATGAAATATTTGGCCCTGTGATGGCTTTGATGAAGTTTAAGACTATTGAAGAAGCAATAAAGTGTGCCAATAATACCAAATATGGCTTAGCAGCAGGCATTGTGACCAAGAGCTTGGATATAGCAAACACTGTGTCAAGGTCCATTCGTGCAGGCATTGTTTGGATCAACTGCTACTTTGCCTTTGGGAATGACATTCCTTATGGAGGGTACAAGATGAGTGGATTTGGAAGAGACTTTGGATTGGAAGCCCTACATAAGTATCTACAAGTTAAATCTGTTGTGACTCCCATTTACAATTCTCCTTGGCTTTGA 1272 0.4261 MPGTERARIMMKWADLIDQNIEEIAALDTIDAGKLYHWCKAVDIPAAASTIRYYAGAADKIHGEVLKPSRELHAYTLLEPIGVVGHIIPWNFPSTMFVAKVGPSLAAGCTIVIKPAEQTPLSALYYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMDIDKISFTGSTEVGREIMQAAAKSNLKPVSLELGGKSPFIVFDDADVDKAAELALLGILFNKGEICVAGSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKSQQGPQVDKRQFEKILSYIEHGKREGATLLTGGKRVGNKGYYIEPTIFSNVKEDMLIAKDEIFGPVMALMKFKTIEEAIKCANNTKYGLAAGIVTKSLDIANTVSRSIRAGIVWINCYFAFGNDIPYGGYKMSGFGRDFGLEALHKYLQVKSVVTPIYNSPWL. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03412 423 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 189 196 IPR029510 GO:0016491
Seca10g03412 423 FunFam Aldehyde dehydrogenase3 193 382 - -
Seca10g03412 423 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 413 - -
Seca10g03412 423 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 193 382 IPR016163 GO:0016620
Seca10g03412 423 FunFam Aldehyde dehydrogenase, putative 385 411 - -
Seca10g03412 423 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 411 IPR016162 GO:0016491
Seca10g03412 423 FunFam Aldehyde dehydrogenase 1 1 214 - -
Seca10g03412 423 SUPERFAMILY ALDH-like 1 419 IPR016161 GO:0016491
Seca10g03412 423 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 217 228 IPR016160 GO:0016491
Seca10g03412 423 Pfam Aldehyde dehydrogenase family 1 413 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03412 Seca-Chr10 53378668 53386304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03412 1 423 Aldehyde Dehydrogenase Gene Family AT3G24503 72.170 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03412 K12355 - gmx:100791396 798.119