LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g03412	ATGCCCGGAACTGAAAGAGCACGAATTATGATGAAATGGGCAGACCTAATTGATCAAAACATAGAAGAAATAGCAGCATTAGATACAATTGATGCCGGAAAGTTATACCATTGGTGCAAAGCTGTTGACATTCCTGCAGCAGCAAGTACTATACGCTACTATGCTGGTGCTGCTGATAAAATCCATGGAGAGGTCTTAAAACCATCTAGGGAGTTGCATGCATATACTTTGCTGGAACCAATTGGTGTTGTGGGACACATTATTCCCTGGAATTTCCCTAGCACCATGTTTGTTGCCAAGGTTGGTCCTTCTCTGGCTGCAGGATGCACAATAGTTATCAAGCCTGCTGAACAAACACCTCTCTCTGCTTTGTATTACGCTCATCTAGCTAAGCTGGCTGGAATTCCAGATGGAGTGCTCAATGTTGTGCCCGGGTTTGGCCCAACTGCAGGGGCTGCAATAAGCTCACACATGGACATTGATAAGATCAGCTTTACTGGTTCAACAGAAGTAGGCCGTGAAATAATGCAAGCTGCAGCTAAGAGTAATTTGAAACCAGTTTCACTTGAATTAGGAGGGAAATCACCTTTCATAGTGTTTGATGATGCTGATGTGGATAAAGCTGCTGAACTTGCTCTCTTGGGCATCCTATTTAATAAGGGAGAAATTTGTGTAGCAGGTTCCCGTGTGTTTGTTCAAGAAGGAATCTATGATGAATTTGAGAAGAAGTTGGTGGAGAAAGCAAAAGCTTGGGTGGTTGGGGATCCTTTTGATCCTAAAAGTCAACAAGGGCCTCAGGTTGACAAGAGGCAATTTGAAAAAATCCTTTCCTATATTGAGCATGGAAAGAGAGAAGGGGCCACCCTTTTGACAGGTGGTAAAAGAGTGGGCAACAAGGGTTACTACATTGAGCCTACTATTTTCTCCAATGTTAAGGAGGACATGCTTATAGCAAAGGATGAAATATTTGGCCCTGTGATGGCTTTGATGAAGTTTAAGACTATTGAAGAAGCAATAAAGTGTGCCAATAATACCAAATATGGCTTAGCAGCAGGCATTGTGACCAAGAGCTTGGATATAGCAAACACTGTGTCAAGGTCCATTCGTGCAGGCATTGTTTGGATCAACTGCTACTTTGCCTTTGGGAATGACATTCCTTATGGAGGGTACAAGATGAGTGGATTTGGAAGAGACTTTGGATTGGAAGCCCTACATAAGTATCTACAAGTTAAATCTGTTGTGACTCCCATTTACAATTCTCCTTGGCTTTGA	1272	0.4261	MPGTERARIMMKWADLIDQNIEEIAALDTIDAGKLYHWCKAVDIPAAASTIRYYAGAADKIHGEVLKPSRELHAYTLLEPIGVVGHIIPWNFPSTMFVAKVGPSLAAGCTIVIKPAEQTPLSALYYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMDIDKISFTGSTEVGREIMQAAAKSNLKPVSLELGGKSPFIVFDDADVDKAAELALLGILFNKGEICVAGSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKSQQGPQVDKRQFEKILSYIEHGKREGATLLTGGKRVGNKGYYIEPTIFSNVKEDMLIAKDEIFGPVMALMKFKTIEEAIKCANNTKYGLAAGIVTKSLDIANTVSRSIRAGIVWINCYFAFGNDIPYGGYKMSGFGRDFGLEALHKYLQVKSVVTPIYNSPWL.	424

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g03412	423	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	189	196	IPR029510	GO:0016491
	Seca10g03412	423	FunFam	Aldehyde dehydrogenase3	193	382	-	-
	Seca10g03412	423	PANTHER	ALDEHYDE DEHYDROGENASE-RELATED	1	413	-	-
	Seca10g03412	423	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	193	382	IPR016163	GO:0016620
	Seca10g03412	423	FunFam	Aldehyde dehydrogenase, putative	385	411	-	-
	Seca10g03412	423	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	1	411	IPR016162	GO:0016491
	Seca10g03412	423	FunFam	Aldehyde dehydrogenase 1	1	214	-	-
	Seca10g03412	423	SUPERFAMILY	ALDH-like	1	419	IPR016161	GO:0016491
	Seca10g03412	423	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	217	228	IPR016160	GO:0016491
	Seca10g03412	423	Pfam	Aldehyde dehydrogenase family	1	413	IPR015590	GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g03412	Seca-Chr10	53378668	53386304	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g03412	1	423	Aldehyde Dehydrogenase Gene Family	AT3G24503	72.170	0.0	650

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g03412	K12355		-	gmx:100791396	798.119

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