Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03411 ATGGCAAATCTCAGCAATGGCCACAGCCACATAAACTCCTTTGTCAAGATTCCAAAAGTCAAGTTTACGAAGCTTTTCATCAATGGAGAATTTGTGGATTCAGTTTCAGGAAAAACGTTTGAGAGTGTTGATCCAAGAACAGAGGAAGTGCTAACAGAAATAGCAGAGGCTAACAAAGAAGATGTTGATATTGCTGTGAGGGCCGCACGTAAGGCATTCGATTCTGGTCCATGGCCACGCATGCCCGGTGCTGCGAGAGCAAAGATTATGCTGAAGTGGGCAGAGCTAATTGAACAGAACCTTGAAGAAATTGCAGCATTGGATACCATTGATGGGGGCAAGCTATATAGTTGGTGTAAGGGTGTGGATGTTCCTGAAGCAGCCAATATCCTGCGTTACTATGCTGGTGCTGCTGATAAAATTCATGGAGATGTATTCAAAACATCCAGAGACCTTCACTTGTATACACTGATGGAACCTATTGGAGTTGTTGGACACATTATCCCTTGGAATTTCCCCACCATTATGTTCTTTGCTAAGGTCAGCCCTGCCTTGGCTGCTGGCTGCACCATGGTCCTTAAGCCTGCTGAACAAACACCACTCTCCTCACTCTTTTATGCTCATCTTGCTAAGCAGGCTGGTATCCCAGATGGAGTGCTCAATGTAGTACCTGGATTTGGCTCAGTTGCTGGGGCTGCAATAGCCTCACATATGGACATTGATACGATTAGTTTCACAGGTTCAACAGAAACAGGTCGTCAAGTAATGAAGGCTGCGGCCATGAGCAATTTGAAACCTGTTTCACTCGAATTAGGAGGCAAGTCACCAGTCTTGATTTTTGATGATGCTGATGTAGATAAAGCTGTTGACCTTGCTCTCTTTGGCATCCTACACAACAAGGGAGAAATCTGTGTTGCGTTTTCCAGAGTTTATGTCCAGGAAGGGATTTATGATGAATTTGAGAAGAAGGTGGTGGAGAAGGCAAAAACTTGGGTAGTGGGGGACCCTTTTGATCCTAAAGTTCAGCAAGGACCCCAGACTAGTAAGGCACAATTTGATAAAATTCTTTCCTATATTGAGCATGGAAAGAATCAAGGAGCCACATTATTGACTGGGGGTAAGCCATTGGGAAACAAAGGATATTACATTGAGCCTACTATTTTCACCAATGTTAAGGAGGACATGTTAATAGTACAAGATGAAATATTTGGACCTGTAATGGTACTTTCTAAGTTCAAGACCGTTAAGGAAGCAATTGAGAAAGCCAACAACAGTAGATATGGTCTAGCAGCAGGGATTGTGACCAAGAACTTGGATATTGCCAACACAGTCTCTAGGTCCATCCGTGCAGGCATTATTTGGATCAATTGCTTTTTTGCCTTTGATATTGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTATGGATTGGAAGCACTTCACAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCCCCCTGGCTTTGA 1512 0.4306 MANLSNGHSHINSFVKIPKVKFTKLFINGEFVDSVSGKTFESVDPRTEEVLTEIAEANKEDVDIAVRAARKAFDSGPWPRMPGAARAKIMLKWAELIEQNLEEIAALDTIDGGKLYSWCKGVDVPEAANILRYYAGAADKIHGDVFKTSRDLHLYTLMEPIGVVGHIIPWNFPTIMFFAKVSPALAAGCTMVLKPAEQTPLSSLFYAHLAKQAGIPDGVLNVVPGFGSVAGAAIASHMDIDTISFTGSTETGRQVMKAAAMSNLKPVSLELGGKSPVLIFDDADVDKAVDLALFGILHNKGEICVAFSRVYVQEGIYDEFEKKVVEKAKTWVVGDPFDPKVQQGPQTSKAQFDKILSYIEHGKNQGATLLTGGKPLGNKGYYIEPTIFTNVKEDMLIVQDEIFGPVMVLSKFKTVKEAIEKANNSRYGLAAGIVTKNLDIANTVSRSIRAGIIWINCFFAFDIDCPFGGYKMSGFGRDYGLEALHKYLQVKSVATPIYNSPWL. 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03411 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 491 IPR016162 GO:0016491
Seca10g03411 503 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 15 494 - -
Seca10g03411 503 FunFam Aldehyde dehydrogenase, putative 465 491 - -
Seca10g03411 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491
Seca10g03411 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 462 IPR016163 GO:0016620
Seca10g03411 503 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 27 292 - -
Seca10g03411 503 SUPERFAMILY ALDH-like 15 499 IPR016161 GO:0016491
Seca10g03411 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491
Seca10g03411 503 Pfam Aldehyde dehydrogenase family 31 493 IPR015590 GO:0016491
Seca10g03411 503 FunFam Aldehyde dehydrogenase3 273 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03411 Seca-Chr10 53162769 53167555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03411 4 503 Aldehyde Dehydrogenase Gene Family AT3G24503 67.864 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03411 K12355 - gmx:100784449 927.161