Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03397 ATGGCAGATTTTAAAAATCCTTTGCAGACTAATTCTCTTGAAATGGTGCTGGTGGATGAACAGGAACACAGAATCCATGCTTATGTCAAATGTGCTCTTATTCAAAGTTTCGAAAATAGACTTAAGGAAGGTTCTTCCTATGTTTTGGAGAATCTTTTAGTAGCAGAGAATAAAATGAAGTTCAAAACCACAACTAAGAAGTTTAAGCTAGGTTTTATGCAACTTACAAGAATTGCTGAAACTCAGATTGATACCATTCCAGTCAACCATTTTGAGTTTGTTCCTTTTTCTGAAATTGTCTCCGGTTCTGATGAGTTTATCTTGATGGATGTCATTGGACACGTAGTTCAACGATCTGATGTTAAGGAATCAAAAACCAGTAAGCTTTTGGAAGTCATTCTTGAAGATTTAGACAACAATCAAATGGTCTGTACTTTATGGGGTGATTTTGCAGACCAAATGGAGAGTTACCTTGCTAATGATACATCTAACAATGTTGTTATTGTTATACTCCAATTTTGCAAGCGTAATTTCTTCAATGGCAAAATGGGTGTGTCTAATGCTTATAATGGTACTAAGCTGTTGATTAACCCTAATATCAAGCATGACTTAGAGTATAGAGAAAGGCTGAATAATTTGGAGGTTGATATTAGTCAAGTTAGCCATGCTTCTGGATACAGCTCTCTCTCTGTTAGCGAAGACATACTTCAGACACAAAGGATGACCATATCTGACATTGTTGACTCTTTAAATCCATGCTTATGTTCTTTGCTGGGAAAAATAATTGAGATTGATGTGGAGAAGGGATGGTATTATGACTCATGTAACAAATGTGCGAGGAAGGTCATAAAAGTAGGGAATAAATTTTTCTGCGAGCACTGTGAGAAGATGATGGTTGGAGTCACTAGATTTATGGTGAATGTTAATATAATTGACGACACTGGATCGGCCAGCTTTGTCATGTTTAATCATGCTGTTAATCAATTCTTGGGGAAGTCAGCTGCAGATTTAGTTGAACAAGACAATAAGGCAAAATTTGTTACTGGTTATCCACCTGATTTTGAAGCTTTTCTGAACAAAACAATGTTATTCAAAGTGGAGATTTCCCAAGCAAACCTTTATCAAAATTGGCATGCTTATACTATTAAGAAGTTTACTGATGATAAGGATACAATTGATCAGTTTAAGACATTACACTCAATTAAGGATGGTGAAGAAGATGGTGAGATGCCTTCACCTCAAATTGATGACAATATGAAGAATGAGATATACAATGTTGAGGAATCCCAGGTGGAACTTAAAGAAGGACTCTCACAGGTGGTCTCCAGTGGTGCAAACGATGACACTCCTATGAACAAATTTGCTAGAAAAAGGGAAGCTCCTCCAATTAATTTGTGCTCTATTCTTGATGAGGAAGAAACTCAGGCATCCAGCACTAAGATGCCCAAGTTATTGAAAGTGAAACAGGAACCAGAAAAGTGA 1482 0.3657 MADFKNPLQTNSLEMVLVDEQEHRIHAYVKCALIQSFENRLKEGSSYVLENLLVAENKMKFKTTTKKFKLGFMQLTRIAETQIDTIPVNHFEFVPFSEIVSGSDEFILMDVIGHVVQRSDVKESKTSKLLEVILEDLDNNQMVCTLWGDFADQMESYLANDTSNNVVIVILQFCKRNFFNGKMGVSNAYNGTKLLINPNIKHDLEYRERLNNLEVDISQVSHASGYSSLSVSEDILQTQRMTISDIVDSLNPCLCSLLGKIIEIDVEKGWYYDSCNKCARKVIKVGNKFFCEHCEKMMVGVTRFMVNVNIIDDTGSASFVMFNHAVNQFLGKSAADLVEQDNKAKFVTGYPPDFEAFLNKTMLFKVEISQANLYQNWHAYTIKKFTDDKDTIDQFKTLHSIKDGEEDGEMPSPQIDDNMKNEIYNVEESQVELKEGLSQVVSSGANDDTPMNKFARKREAPPINLCSILDEEETQASSTKMPKLLKVKQEPEK. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03397 493 CDD RPA1_DBD_B_like 110 210 - -
Seca10g03397 493 SUPERFAMILY Nucleic acid-binding proteins 90 212 IPR012340 -
Seca10g03397 493 CDD RPA1_DBD_C 255 373 IPR047192 -
Seca10g03397 493 Pfam Domain of unknown function DUF223 14 102 IPR003871 -
Seca10g03397 493 SUPERFAMILY Nucleic acid-binding proteins 10 80 IPR012340 -
Seca10g03397 493 PANTHER OS03G0429900 PROTEIN 10 388 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca10g03397 493 SUPERFAMILY Nucleic acid-binding proteins 238 383 IPR012340 -
Seca10g03397 493 Gene3D - 1 80 IPR012340 -
Seca10g03397 493 Gene3D - 227 403 IPR012340 -
Seca10g03397 493 MobiDBLite consensus disorder prediction 441 460 - -
Seca10g03397 493 Gene3D - 85 219 IPR012340 -
Seca10g03397 493 Pfam Replication factor-A C terminal domain 259 371 IPR013955 -
Seca10g03397 493 MobiDBLite consensus disorder prediction 471 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03397 Seca-Chr10 52674430 52677161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03397 17 370 Core DNA Replication Machinery Family AT5G08020 22.788 5.69e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03397 - - mtr:112422829 345.895