Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03392 ATGGGCCAGTACTCTAGGACTGTCTATGCCTATACCTACTTCGATGACATTGTTGCACATGGTGGTTGGGATGACTGGAACAGTGCCAACAACAAAAACAAGACTGTGTTTTTCGGAGTGTACAAGTGCTGGGGCCCAGGAGCAGCAGCAGCACGTGGAGTCTCTTTGGCCCAAGAGCTAGATTTTGAATTAGCCCATCCATTCTTGGTCAAGAGTTTTGTCAATGGGAGACACTGGATTGCACCCTCTGATGCTTAG 258 0.4845 MGQYSRTVYAYTYFDDIVAHGGWDDWNSANNKNKTVFFGVYKCWGPGAAAARGVSLAQELDFELAHPFLVKSFVNGRHWIAPSDA. 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03392 85 Gene3D - 1 84 IPR012334 -
Seca10g03392 85 SUPERFAMILY Pectin lyase-like 2 82 IPR011050 -
Seca10g03392 85 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 81 - -
Seca10g03392 85 Pfam Pectinesterase 3 76 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03392 Seca-Chr10 52291866 52292446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03392 1 85 Carbohydrate Esterase AT5G47500 76.471 4.73e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03392 - - cam:101501763 168.318