LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g03367	ATGTCAACCGCACCGGCGCCTTCCTCGCCGCCGGGGAACAACTCCACCGCTCCTCCGCCGTCAACTCCGGCTACACCATCCGCACCACCGCCCGCCACTCCTTCCGCACCGCCTCCTGCCACTCCTTCCTCCCCGCCGCCGGCCACTCCATCATCGCCGCCTCCGGCAACTCCCTCCTCGCCTCCGCCAGCAACTCCTTCCTCACCACCTCCAGCCACTCCCTCAGCGCCTGCACCGGCCACGCCTTCGACCTCTCCTCCGGCTCCTACCACGCCATCGACCTCTCCGCCAGCTCCTGCGACGCCGTCGAGCTCTCCACCGGCTCCGCCATCTGGAGGCGGCACCACTACTCCGAGTCCACCGTCTCGGAGCTCGCCATCTCCTCCAAACAGCTCGAATCGAACCACGCCCTCGTCGAACTCCTCTCCGCCCTCGTCATCGTCGTCGAGTATTTCGACTGGCGTCGTTGTCGGAATCGCCGTCGGGGCCGTGGCTGTTCTTCTGGTGTTGAGCATTCTGTGCATATGCTGCAGGAAGAAGAAGAGAAGACGCGATGAGGAGTACTATGTTCCTCCGCCGCCGCAGCAACCGCCGCGGGGACCCAAAGATGACCCATATGGTGGACCCCCACGTCAATGGCAACACAATGCTCCCCCTCCTTCAGATCATGTAATCTCAGTGGTGCCTAAGCCATCACCTCCACCCCCTGTTGCATCAAGACCACCAGCCCATTCACCGGTTTATGTTGCACAACCTCCTCCTCCTCCACCTTTCATAAGCAGCAGTGGTGGGTCTGGATCAAACTATTCAGGTGGTGAGCCACTTCCACCTCCTTCTCCTGGCATGTCTCTAGGCTTCTCAAAGAGCTCGTTTTCATATGAGGAGTTGGCACGGGCAACAGATGGTTTCTCTGATGCCAACCTCCTTGGACAAGGTGGATTTGGATATGTGCACAGAGGAATTCTCCCCAACGGTAAGGAGGTGGCTGTCAAGCAGCTAAAGGCTGGAAGTGGGCAAGGGGAGCGTGAGTTTCAAGCTGAAGTTGAGATAATTAGCCGTGTTCATCACAAACATCTTGTTTCTTTGGTTGGATACTGTATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAATACATTGGAATTCCACTTACATGGAAGAGGGCGTCCCACCATGGATTGGCCCACAAGACTACGAATTGCCTTAGGAGCTGCAAAAGGACTGGCCTATCTTCATGAAGATTGTCATCCTAAGATTATCCATCGTGATATCAAATCTGCCAACATCCTTCTGGATTTTAAGTTTGAAGCAAAGGTTGCAGATTTTGGTCTTGCAAAGTTTTCTTCCGATGTCAATACTCATGTTTCTACTCGAGTGATGGGCACCTTTGGGTATCTGGCTCCAGAATATGCATCTAGTGGAAAACTTACAGAAAAATCAGATGTTTTCTCCTATGGAGTCATGCTTCTTGAGTTAATCACTGGACGGCGACCAGTTGATAAAACTCAAACTTTCATGGAGGATAGTTTGGTAGACTGGGCTAGGCCTTTGCTCACTCGTGCTTTGGAAGAAGATAATTTTGATTCTCTGATAGACCCAAGGCTGGAGAATGAATATGATCCTAATGAGATGGCTAGAATGGTGGCATGTGCTGCGGCTAGCACACGTCATTCAGCAAAACGTCGACCAAGGATGAGCCAGGTTGTCCGTGCTCTGGAAGGAGATGTGTCTCTAGCAGATCTTAATGAAGGAATCAGACCTGGACACAGCACTATGTACAGTTCTCATGAAAGCTCAGATTATGATACTGCACAATACAGAGAAGACATGATAAAGTTCAGAAAAATGGCACTGGGAACTCAGGAGTATGCTGGCAGCAGTGAATACAGTGCAGCTACAAGTGAGTACGGTTTAAACCCATCTGGCTCAAGCAGTGAAGCGCAGAGCCGCCAAACCACCCGGGAAATGGAAATGAGAAGAATGAAGAACAGTCAAGGTTTCAGTGGAAGTTCCTGA	2028	0.5232	MSTAPAPSSPPGNNSTAPPPSTPATPSAPPPATPSAPPPATPSSPPPATPSSPPPATPSSPPPATPSSPPPATPSAPAPATPSTSPPAPTTPSTSPPAPATPSSSPPAPPSGGGTTTPSPPSRSSPSPPNSSNRTTPSSNSSPPSSSSSSISTGVVVGIAVGAVAVLLVLSILCICCRKKKRRRDEEYYVPPPPQQPPRGPKDDPYGGPPRQWQHNAPPPSDHVISVVPKPSPPPPVASRPPAHSPVYVAQPPPPPPFISSSGGSGSNYSGGEPLPPPSPGMSLGFSKSSFSYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGAAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLTRALEEDNFDSLIDPRLENEYDPNEMARMVACAAASTRHSAKRRPRMSQVVRALEGDVSLADLNEGIRPGHSTMYSSHESSDYDTAQYREDMIKFRKMALGTQEYAGSSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRRMKNSQGFSGSS.	676

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g03367	675	SMART	serkin_6	303	539	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g03367	675	MobiDBLite	consensus disorder prediction	184	283	-	-
	Seca10g03367	675	ProSitePatterns	Protein kinases ATP-binding region signature.	309	331	IPR017441	GO:0005524
	Seca10g03367	675	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	162	638	IPR047117	-
	Seca10g03367	675	Gene3D	Transferase(Phosphotransferase) domain 1	379	586	-	-
	Seca10g03367	675	ProSiteProfiles	Protein kinase domain profile.	303	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g03367	675	FunFam	proline-rich receptor-like protein kinase PERK1	281	378	-	-
	Seca10g03367	675	FunFam	Proline-rich receptor-like protein kinase PERK1	379	587	-	-
	Seca10g03367	675	Pfam	Protein tyrosine and serine/threonine kinase	308	574	IPR001245	GO:0004672\|GO:0006468
	Seca10g03367	675	SUPERFAMILY	Protein kinase-like (PK-like)	277	576	IPR011009	-
	Seca10g03367	675	MobiDBLite	consensus disorder prediction	224	260	-	-
	Seca10g03367	675	MobiDBLite	consensus disorder prediction	190	205	-	-
	Seca10g03367	675	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	423	435	IPR008271	GO:0004672\|GO:0006468
	Seca10g03367	675	Gene3D	Phosphorylase Kinase; domain 1	285	378	-	-
	Seca10g03367	675	MobiDBLite	consensus disorder prediction	1	152	-	-
	Seca10g03367	675	MobiDBLite	consensus disorder prediction	128	152	-	-
	Seca10g03367	675	MobiDBLite	consensus disorder prediction	11	127	-	-
	Seca10g03367	675	MobiDBLite	consensus disorder prediction	632	655	-	-
	Seca10g03367	675	MobiDBLite	consensus disorder prediction	632	675	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g03367	Seca-Chr10	51223692	51228543	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g03367	120	658	Trihelix Transcription Factor Family	AT1G70460	49.632	9.33e-174	511

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Seca10g03367		PK_Tyr_Ser-Thr	7.5e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g03367	-		-	gmx:100781944	850.121