Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03357 ATGGGGGAAGGTGAAGGTGGTGACTGCGCTCCCAAGAATGTGCCGTCATCCTCATCGGAAGTTGTTGCATCGGCGGCGGCAGCATCGGCGTCGTTGGATGCTCCGGCGAAGAAACTGGCGAGGCAGCTCGATTTTACTGGCGCGATGGAACAATTGCTATCGCAGCCGCAGCAGCAGAGTGTGACGCAGCAGCCGGTGACTGTGTTGCCGTTGCCGCCGCAACAGGCACCTCATCCTTCGGTGAGGGTTGGGAAACCAGAATCTCCAAAGTCAAGATCAAGACCTAACTTTGAAATCAAAGAAGCTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAACTATTTGCACAGCAATATGTGCATGAGTCAGACAGAGAGGATGGGTCTTCACACAGCACAGCAGTTCGCTGGAGATTTGCACAGCAGCTTGTTGGAGATGATGTAACGGTCTTTGCACAGCAGCTTTCCGAAGAATCGTTAAGATATTGTGAATGTTTTGCATCGGGAATATATTGTGAGGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGAAAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCAAGCAGCCCTCATGGCACACGTGATAACCGGGAGGAGGCTGGGGAAGGTTTAATATTAGTAAAACATAACAAGGGGTGCCATTGTAAAAAATCTGGATGCCTGAAGAAGTATTGTGAATGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTTCATGGAGATCAAAATAACAACCTGACATATATTCAGCAAGCAGCAAATGCTGCCATAACTGGAGCTATTGGTGCCTCTGGCTATTCATCACCTCCAGTATCCAAGAAAAGAAAAGGTCAGGAACTCTTCTTTTGGCCTGCAGCCAAGGATCCAACAAATAGCAAGTTGGGACAACAGGTAAACCATGTCAGAGGTCCAGCTCCTTCCTCATCCTTGTCACCTGTGCCAGGTGCTCGTGTTGGAACTGCTACATTAGGTCCTTCGAAATTTATGTACAGGTCTCTTTTAGCAGACATTATACAACCACAGCACCTCAAGGAGCTTTGCTCAGTTCTGGTACTAGTATCTGGACAAGCTGCAAAGACACTTGCAGACCAGAAAAGTTCAATGGAAAAGCATACAGAAGATCAGATGGAAACTTCCCTTGCTTCTTCAACTCAAGAGCAGTTACCAACTCAAAAGGAGGGTGTTGTTGAGAAGGCTATAGCTGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCAGATAATTCCAGTTCAGATGGCGCTGATGTCCCGAAAGGGAGGCCAATGTCACCTGGGACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTTATGACAGCTGCCTCCCCTACTGGGCCAATGGTCCATGCTTGCAACACATCTTCGCAATTTCCTTATGGACAAGGAATGACAGAGGTCTACGCTGAGCAAGAAAGGATTGTACTAACAAAGTTTAGAGATTTTCTCAATAGGGTTATCACTATGGGAGAAATAAACGGCAAGAATGACTTTTTCAACTGCCAATCTATTTATGCTCCACTTATTCCTCTGCAAATGTTTGTGCTTAATACAAACAAAACAAAGTGTTCTTCATTGGCTAGAAGTGAATTAGAGAGTCAAAAGGACCCAATCAGCTGTGGCATTGGAAATGCCAGTACTGAGTTGGTGCATCAGCAGGGGGCTGCTAGCAATGGTGTTAACAAAACTGTTGTTCCACCATTGGCCACAACTCCAGCATCTATGATCCCTGGTAATAATGTTGCTGAAAATGGGGAGACTAAACCGAAGGTCGAAAAAGAGATGTGA 1956 0.4504 MGEGEGGDCAPKNVPSSSSEVVASAAAASASLDAPAKKLARQLDFTGAMEQLLSQPQQQSVTQQPVTVLPLPPQQAPHPSVRVGKPESPKSRSRPNFEIKEATPKKQKQCNCKHSKCLKLFAQQYVHESDREDGSSHSTAVRWRFAQQLVGDDVTVFAQQLSEESLRYCECFASGIYCEGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNREEAGEGLILVKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNLTYIQQAANAAITGAIGASGYSSPPVSKKRKGQELFFWPAAKDPTNSKLGQQVNHVRGPAPSSSLSPVPGARVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLADQKSSMEKHTEDQMETSLASSTQEQLPTQKEGVVEKAIADDCSSANQTDKISPDNSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPTGPMVHACNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINGKNDFFNCQSIYAPLIPLQMFVLNTNKTKCSSLARSELESQKDPISCGIGNASTELVHQQGAASNGVNKTVVPPLATTPASMIPGNNVAENGETKPKVEKEM. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03357 651 MobiDBLite consensus disorder prediction 627 651 - -
Seca10g03357 651 MobiDBLite consensus disorder prediction 409 483 - -
Seca10g03357 651 ProSiteProfiles CRC domain profile. 106 277 IPR005172 -
Seca10g03357 651 MobiDBLite consensus disorder prediction 450 468 - -
Seca10g03357 651 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 240 274 IPR005172 -
Seca10g03357 651 PANTHER TESMIN/TSO1-RELATED 40 548 IPR028307 -
Seca10g03357 651 MobiDBLite consensus disorder prediction 340 360 - -
Seca10g03357 651 SMART CXC_2 105 192 IPR033467 -
Seca10g03357 651 SMART CXC_2 237 278 IPR033467 -
Seca10g03357 651 MobiDBLite consensus disorder prediction 69 102 - -
Seca10g03357 651 MobiDBLite consensus disorder prediction 85 102 - -
Seca10g03357 651 MobiDBLite consensus disorder prediction 424 438 - -
Seca10g03357 651 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03357 Seca-Chr10 50977324 50987577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03357 35 631 CPP Transcription Factor Family AT4G29000 47.724 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca10g03357 TCR 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03357 - - gmx:100777698 864.759